Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02155 ATGCATTTCAAAACAAAAACTTCTGCTGCCCTACTTGATATCAAGATTGATCGAGAAATATTGGATTCAGTTACAGTTGCCCTTAAAGAATATTTTCGCAATGACGTCTCATTAGTCTTGTTGTTGGATTGGTACTGCTGCTATTGGCTCCTATTATTAGCAGTTCAGCATCTGATTGCAGAAGTCAGTGAAATTATGACTAATGATACTGTAGATAAGGCTGGTTTGTGGAAAAACAAACTCATTGATCAGTCATTGGAGCTTTTAGATTATTTACCTCAAGCAATTCAAGACATTTGCTTCTTGAAAGAGATCCACATGGAAATGTTCAAGTACCTAAAGTTGCATATCATTATATTTTGTGTTCATTTGTCTTCTTTATCCAATTTTGAATCAGTTGCAGACTGTGATACCAGAGATTTTACTGATCAAAAAAGGGAGGACATGTTGGTTTCCGATTTCGTTCGACTTTGCTTTAAATATGAAGGTTCTGCAGTTCAGTGCAGTAATCAAATTGGTGTAAGTAATGGTGACTCTGCATCTGTACCGTATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCTGATTACGTACCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGATAACTTTAGAATGAATACTTATTCCGACAGAGACCAGCAAAATAAGGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGAGTAAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAGTGCCATCTTGTGTTTGACAGGAACATGAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAAGTATCCTAGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGTGAAATCATATTTGTTCCTAGCGGATGGTTGGATTTGGGAAATGGGAAAACTCTTGATCTTGAACGGTGTTCCCGATCGAAGCTTCGAAAACAATGCATAAAGTATCTTGGACCTCAAGAGAGGGAGAACTATGAATATGTTGTCTGCGATGGAAAAATTATCAACAACCAATCTGGAGATTTTCTTCATACCAAAAAGGATTCTGAAGATGCTAAGTGGATATTTGTAATGAGCACCGAGAAGAAACTTTATGCTGGAAAGAAAAAGAAGGGGTTGTTCCATCATTCTTCTTTTTTGGCTGGTGGAGCTACCTTGGCTGCTGGACGGCTCGAAGCCGAGGATGGGGTTCTGAAGTCCATCTCTGCATATAGTGGACACTATCGGCCAACAGACGAAACACTCGACGCGTTCTTATCATATCTCAGGGAAAATGGTGTCAATCTTGTTACCTTTCATGAATTTTGTGTAGGTATGCGTAGCTTGGACCAAATGGTAGTCAAGGAAGGATCATGGTCCTAG 1479 0.3888 MHFKTKTSAALLDIKIDREILDSVTVALKEYFRNDVSLVLLLDWYCCYWLLLLAVQHLIAEVSEIMTNDTVDKAGLWKNKLIDQSLELLDYLPQAIQDICFLKEIHMEMFKYLKLHIIIFCVHLSSLSNFESVADCDTRDFTDQKREDMLVSDFVRLCFKYEGSAVQCSNQIGVSNGDSASVPYLKDWHFVKEYPDYVPYITPMFFCDDWLNLYLDNFRMNTYSDRDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRNMKSCVYNIFDEVSDSKYPSFKKAIWLECTQEAGEIIFVPSGWLDLGNGKTLDLERCSRSKLRKQCIKYLGPQERENYEYVVCDGKIINNQSGDFLHTKKDSEDAKWIFVMSTEKKLYAGKKKKGLFHHSSFLAGGATLAAGRLEAEDGVLKSISAYSGHYRPTDETLDAFLSYLRENGVNLVTFHEFCVGMRSLDQMVVKEGSWS 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02155 492 SMART cupin_9 183 343 IPR003347 -
Vifa1g02155 492 Gene3D Cupin 111 330 - -
Vifa1g02155 492 ProSiteProfiles JmjC domain profile. 208 359 IPR003347 -
Vifa1g02155 492 Pfam Cupin-like domain 230 330 IPR041667 -
Vifa1g02155 492 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 329 470 IPR044159 -
Vifa1g02155 492 SUPERFAMILY Clavaminate synthase-like 133 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02155 Vifa-Chr1 345818260 345821712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02155 200 329 Glycosyltransferase AT1G78280 24.818 6.03e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa1g02155 Cupin_8 5.6e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02155 - - lja:Lj1g3v0342020.1 365.155