Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02154 ATGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTTTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGTATATGATGTCTTCTAA 654 0.3914 MVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGFVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQVYDVF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02154 217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 89 IPR014001 -
Vifa1g02154 217 Gene3D - 97 214 IPR027417 -
Vifa1g02154 217 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 26 35 IPR002464 -
Vifa1g02154 217 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 212 - -
Vifa1g02154 217 Gene3D - 1 87 IPR027417 -
Vifa1g02154 217 SMART helicmild6 140 215 IPR001650 -
Vifa1g02154 217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 110 217 IPR001650 -
Vifa1g02154 217 Pfam Helicase conserved C-terminal domain 127 213 IPR001650 -
Vifa1g02154 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 213 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02154 Vifa-Chr1 344971354 344973190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02154 130 211 Eukaryotic Initiation Factors Gene Family AT3G19760 29.268 1.93e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02154 K10730 - gmx:100811214 336.65