Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g02154 | ATGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAGAAGTCTTAATGTAGGTTTTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGCGGATGTTAAAGGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGTATATGATGTCTTCTAA | 654 | 0.3914 | MVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGFVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFADVKGIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQVYDVF | 217 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g02154 | 217 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 89 | IPR014001 | - | |
Vifa1g02154 | 217 | Gene3D | - | 97 | 214 | IPR027417 | - | |
Vifa1g02154 | 217 | ProSitePatterns | DEAH-box subfamily ATP-dependent helicases signature. | 26 | 35 | IPR002464 | - | |
Vifa1g02154 | 217 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 2 | 212 | - | - | |
Vifa1g02154 | 217 | Gene3D | - | 1 | 87 | IPR027417 | - | |
Vifa1g02154 | 217 | SMART | helicmild6 | 140 | 215 | IPR001650 | - | |
Vifa1g02154 | 217 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 110 | 217 | IPR001650 | - | |
Vifa1g02154 | 217 | Pfam | Helicase conserved C-terminal domain | 127 | 213 | IPR001650 | - | |
Vifa1g02154 | 217 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 213 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g02154 | Vifa-Chr1 | 344971354 | 344973190 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g02154 | 130 | 211 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.268 | 1.93e-08 | 52.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g02154 | K10730 | - | gmx:100811214 | 336.65 |