Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02152 ATGTTTGGAAGAGGTGCACCGAAGAAAAGTGATAACACAAAGTATTATGAGATTCTCGGCGTTTCGAAGAGCGCTTCTCCTGATGATTTGAAGAAGGCGTACAAGAAAGCTGCTATCAAGAATCATCCTGATAAGGGTGGTGATCCTGAAAAGTTCAAAGAGCTTGCACAAGCTTATGAGGTTTTGAGTGATCCAGAGAAGCGTGAGATATATGATCAATATGGTGAAGATGCGCTGAAGGAAGGAATGAGTGGTGGTGGAGGCCATGATCCATTTGATATCTTTTCGTCTTTCTTTGGTGGTGGAGGATTTCCAGGTGGTGGTAGTAGAGTTAGAAGGCAGAGACGTGGTGAAGATGTTGTTCACCCCTTGAAGGTCTCTTTGGAGGATCTTTACCTTGGGACATCTAAGAAGCTTTCTCTCTCGAGAAATGTTCTGTGTTCGAAGTGCAATGGGAAAGGGTCTAAGTCTGGGGCTTCCATGCAATGTTCTGGTTGTCAAGGAAGTGGTATGAAGGTTTCTATGAGGCATCTCGGTGCTAATATGATTCAACAAATGCAACATCCTTGTAATGATTGTAAGGGTACTGGAGAGACAATTTCTGACAAAGATCGATGCCCACAGTGCAAGGGAGAGAAGGTTGTTCAACATAAGAAAGTACTTGAAGTTCATGTTGAAAAGGGAATGCAGAATGGGCAGAAGATTACCTTCCCTGGTGAAGCTGATGAAGCGCCGGATACAGTTACTGGAGACATAGTATTTGTGCTTCAACAGAAGGAGAATCCCAAGTTCAAAAGAAATGGTGAAGATCTGTTTGTAGAACACAGTCTGTCCCTCACTGAAGCTTTATGTGGTTTCCAGTTTGCCCTGACTCATTTGGATGGTCGTCAACTCTTGATTAAATCAAATCCTGGAGAAGTTGTCAAGCCTGATTCTTATAAGGCAATTAATGATGAAGGAATGCCAATGTACCAGAGACCATTCATGAAGGGCAAGCTTTACATTCACTTCACTGTGGAATTTCCAGAGTCTCTGACTCTTGATCAGGTCAAGGCTTTGGAGACAATACTGCCAGCACGACCTGTATCACAGTTGACAGACATGGAGATAGATGAGTGTGAGGAGACAACACTTCATGATGTCAACATGGATGAAGAGTCAAGGAGGAAGAAGCAATCTCCGCAGGAGTCTTATGACGAGGATGATGATATGCCTGGTGGTGCTCAGAGAGTCCAATGTGCTCAGCAGTAA 1251 0.4373 MFGRGAPKKSDNTKYYEILGVSKSASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMSGGGGHDPFDIFSSFFGGGGFPGGGSRVRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMQCSGCQGSGMKVSMRHLGANMIQQMQHPCNDCKGTGETISDKDRCPQCKGEKVVQHKKVLEVHVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKENPKFKRNGEDLFVEHSLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPMYQRPFMKGKLYIHFTVEFPESLTLDQVKALETILPARPVSQLTDMEIDECEETTLHDVNMDEESRRKKQSPQESYDEDDDMPGGAQRVQCAQQ 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02152 416 CDD DnaJ_C 118 345 - -
Vifa1g02152 416 PRINTS DnaJ domain signature 67 86 IPR001623 -
Vifa1g02152 416 PRINTS DnaJ domain signature 47 67 IPR001623 -
Vifa1g02152 416 PRINTS DnaJ domain signature 16 34 IPR001623 -
Vifa1g02152 416 FunFam DnaJ subfamily A member 2 147 213 - -
Vifa1g02152 416 FunFam dnaJ protein homolog 11 109 - -
Vifa1g02152 416 FunFam DnaJ subfamily A member 2 261 343 - -
Vifa1g02152 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 118 259 IPR008971 GO:0006457|GO:0051082
Vifa1g02152 416 CDD DnaJ_zf 147 213 IPR001305 GO:0031072|GO:0051082
Vifa1g02152 416 MobiDBLite consensus disorder prediction 376 416 - -
Vifa1g02152 416 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 393 IPR044713 GO:0006457|GO:0030544
Vifa1g02152 416 SMART dnaj_3 13 67 IPR001623 -
Vifa1g02152 416 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 144 216 IPR036410 -
Vifa1g02152 416 MobiDBLite consensus disorder prediction 376 406 - -
Vifa1g02152 416 Pfam DnaJ domain 14 72 IPR001623 -
Vifa1g02152 416 Gene3D DnaJ domain 11 109 IPR036869 -
Vifa1g02152 416 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 353 IPR008971 GO:0006457|GO:0051082
Vifa1g02152 416 FunFam Chaperone protein dnaJ 3 214 254 - -
Vifa1g02152 416 Hamap Chaperone protein DnaJ [dnaJ]. 11 404 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vifa1g02152 416 Gene3D - 147 213 - -
Vifa1g02152 416 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Vifa1g02152 416 Gene3D - 110 259 - -
Vifa1g02152 416 ProSiteProfiles Zinc finger CR-type profile. 134 218 IPR001305 GO:0031072|GO:0051082
Vifa1g02152 416 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Vifa1g02152 416 Gene3D - 263 343 - -
Vifa1g02152 416 CDD DnaJ 15 64 IPR001623 -
Vifa1g02152 416 Pfam DnaJ central domain 147 213 IPR001305 GO:0031072|GO:0051082
Vifa1g02152 416 SUPERFAMILY Chaperone J-domain 9 108 IPR036869 -
Vifa1g02152 416 Pfam DnaJ C terminal domain 121 342 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02152 Vifa-Chr1 344498034 344499890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02152 5 74 C2H2 Transcription Factor Family AT1G74250 40.506 4.54e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02152 K09503 - gmx:547558 736.487