Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02149 ATGGATCCCTTGATCCGCAAGCTCCGGCGCCACCTTCTCCGATGGCTTCACCGATCTCGTTCCGGATCCGTGTTTTTTGTGAGGAGAATTTCGTACAAGGAAGTTAGAAAAGCAACTGATAGTTTTCAAAGAGTAGTTTATAGCAATTCCGAAGTTTCTGCATATGCTGCGAATTTAGGAGAGGGATGCGGCGGTGTTTGTTTGGTGAAAGAAGTTAAAGATTTTGATAGGGGAAATGATGAGAGTTTTCATAAACAAGTGCAGTTGTTGGGACGGTTGCATCATCGGCACCTTCTTTCACTCAAAGGCTTTTCTCTCGGACACGATCGAAAGAGCAAGAGATTGCTTATATTTGATAATATAGAAAATGGAAGCTTAAAGGAGCATCTTAATGATCCCTTGAAGACTCCTTTAAATTGGAGGACGAGGTTGCAGATAGCTAATGGCGTTGTGGCTGCACTCGAATACTTGTTTCTTTTCATTGAACCGCCGATAAGTCACGTCTCTATTAGCTCTAGCAATATTATGTTAGATGAGAATTTCACCCCTAAACTATCTGATTTTGGCCTTTTTACTGGTGGAAGTTCTGTCATGATGACACAAGATTGCACGGGGCAGGAAAATCGTAAGATTATATTCCAACTTGGAGTGCTCATCCTGGAACTTGTCACTGGTCAGTCTTCAGAGATGGAAGAACTTAAAACTCTTCTAGCTGTGGCAAAATTATGTATCAAATCATGGGACAAACCTTCATATACAATTCCTCAGTTGTTTCGGTATCTTCAAAAGGAGACTGATATTCCCCAACATTAG 813 0.4133 MDPLIRKLRRHLLRWLHRSRSGSVFFVRRISYKEVRKATDSFQRVVYSNSEVSAYAANLGEGCGGVCLVKEVKDFDRGNDESFHKQVQLLGRLHHRHLLSLKGFSLGHDRKSKRLLIFDNIENGSLKEHLNDPLKTPLNWRTRLQIANGVVAALEYLFLFIEPPISHVSISSSNIMLDENFTPKLSDFGLFTGGSSVMMTQDCTGQENRKIIFQLGVLILELVTGQSSEMEELKTLLAVAKLCIKSWDKPSYTIPQLFRYLQKETDIPQH 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02149 270 Gene3D Transferase(Phosphotransferase) domain 1 121 265 - -
Vifa1g02149 270 Gene3D Phosphorylase Kinase; domain 1 17 119 - -
Vifa1g02149 270 SUPERFAMILY Protein kinase-like (PK-like) 24 230 IPR011009 -
Vifa1g02149 270 ProSiteProfiles Protein kinase domain profile. 10 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02149 270 PANTHER OS01G0253100 PROTEIN 27 241 - -
Vifa1g02149 270 SMART tyrkin_6 24 258 IPR020635 GO:0004713|GO:0006468
Vifa1g02149 270 FunFam Protein kinase superfamily protein 16 119 - -
Vifa1g02149 270 Pfam Protein tyrosine and serine/threonine kinase 67 193 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02149 Vifa-Chr1 343960106 343962059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02149 22 270 Receptor kinase-like Gene Family AT3G19300 32.566 2.83e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vifa1g02149 PK_Tyr_Ser-Thr 9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02149 - - aprc:113853565 361.688