LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g02147	ATGAGAATTTCAATGACTTGTTTTCTCTGCTTTGCGATCCAAGTCTTGGTGTATTACATGCTCTTACCAACAAATGCTCTTTCTTTGAGTTCACACACCGATAAACTTGCTTTGCTTGCTTTGAAGGATAAACTTACAAATGGTGTGCCTGATTCTCTACCATCATGGAATGAGTCTCTATCTTTATGTGAATGGCAGGGTGTAGCATGTGGCCGTCGTCACATGAGAGTATCTGTCTTGCATTTGGAGAATCAAACTTGGGGTGGTACTCTTGGTCCATCCTTGGGAAATCTAACATTTCTCAGAATACTCAAACTTAAAAACCTCGCTTTGCATGGTGAAATTCCAGTTCAGATTGGTCGTTTGAAGCGATTGCAAGTTCTTATCTTAAGCTACAACAAACTTCAAGGAGAAATTCCTGTAGAACTCACGAATTGCACAAATATCGAGGAAGTTAATTTGATGGAAAATAAGCTTATTGGAAGAATTCCCACATGGTTTGGATCAATGAAGCAACTTATTATCTTAAATCTTGTGACCAATAGTCTAGTTGGTACAATTCCATCTTCCCTACAAAACATTTCATCACTCCAAATGCTATATCTTACAGAAAATCACTTGGAAGGAACCATACCTTATTCTTTAGGAGGTGTCTTTAGCAATGTCACAAAAATTTCATTAATTGGAAACAAGAATCTTTGTGGAGGAATACCTCAGTTGAAGCTTCCTCCATGTTTTAAGGGGCCATCCAAGAAACACAAAAGATCTCTAAAAAAGAAACTTATCTTCATCACTGTATTTGGCGGAATTTTTATCTCTCTCATAGCTTTTACAATTGTCCATTTTCTTACGAGAAAAGCCAAAAAGCTATCTTCTTCACCATCTTTGCAAAATAGGTCCTTGAGAGTTACCTATGGAGAGCTACATGAAGCAACCAATGGATTTTCTTCATCCAATTTGGTTGGAACAGGAAGTTTTGGCTCTGTTTACAAAGGATCTCTTCTCAACATTGAAAGACCTGTTGCTGTAAAGGTGTTGAATCTTGAAACACGCGGGGCAGAAAAGAGTTTTGTTGCAGAGTGCAATGCTCTGGGAAAGATGAAACACCGGAATCTTGTGAAGATCCTAACTTGTTGTTCAAGTGTTGATTACCAGGGTGAAGATTTCAAGGCTATTGTTTTCGAGTTCATGCCTAATGGGAGTCTTGAAAATTTGTTGCATGATGATGAAGGGTCTAAAAATCATAGTTTCGGCCTCACACAAAGGGTAGACATTGCTCTTGATGTAGCTCATGCTTTGGATTACCTTCACCATGATGAAGAGCAAGTTGTAGTACACTGTGATATTAAACCAAGCAATGTTCTTCTTGATGAAGAGATGGTAGCTCACTTGGGTGACTTTGGATTAGCAAGGCTCATTCATGGTTATTCAAGTAAAGATCAAGTTAGTTCCTCTACAATTAAGGGAACTATAGGATATATTCCTCCAGAGTATGGAGCAGGTGGTCCAGTAACACCAGAGGGAGATATTTACAGTTATGGAATTATGTTGTTGGAAATGATAACCGGAAAGAGACCAACTGATAATATGTTTTGTGAGAATTTTAATCTACACAAATTGTGTAAGATGAAACTTTCTGACGAAATTCTTCAAATAGTGGATTCACGTTTGGTTATGCCATTTATTGAAGATCAGACATGGATTGTGGAAAACAACATAAAGGAGTGTCTAATGATGTTTGCTAAATTAGGAGTTGCATGTTCTGAGGAATTTCACACTCAGAGAATGCTCACAAAAGATGTTATTCTGAAATTGCTTGAAATTAAACAAAAGTTGTCCAGCTAG	1845	0.3762	MRISMTCFLCFAIQVLVYYMLLPTNALSLSSHTDKLALLALKDKLTNGVPDSLPSWNESLSLCEWQGVACGRRHMRVSVLHLENQTWGGTLGPSLGNLTFLRILKLKNLALHGEIPVQIGRLKRLQVLILSYNKLQGEIPVELTNCTNIEEVNLMENKLIGRIPTWFGSMKQLIILNLVTNSLVGTIPSSLQNISSLQMLYLTENHLEGTIPYSLGGVFSNVTKISLIGNKNLCGGIPQLKLPPCFKGPSKKHKRSLKKKLIFITVFGGIFISLIAFTIVHFLTRKAKKLSSSPSLQNRSLRVTYGELHEATNGFSSSNLVGTGSFGSVYKGSLLNIERPVAVKVLNLETRGAEKSFVAECNALGKMKHRNLVKILTCCSSVDYQGEDFKAIVFEFMPNGSLENLLHDDEGSKNHSFGLTQRVDIALDVAHALDYLHHDEEQVVVHCDIKPSNVLLDEEMVAHLGDFGLARLIHGYSSKDQVSSSTIKGTIGYIPPEYGAGGPVTPEGDIYSYGIMLLEMITGKRPTDNMFCENFNLHKLCKMKLSDEILQIVDSRLVMPFIEDQTWIVENNIKECLMMFAKLGVACSEEFHTQRMLTKDVILKLLEIKQKLSS	614

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g02147	614	CDD	STKc_IRAK	321	608	-	-
	Vifa1g02147	614	PANTHER	OS04G0122200 PROTEIN	104	609	-	-
	Vifa1g02147	614	SUPERFAMILY	L domain-like	31	238	-	-
	Vifa1g02147	614	Pfam	Leucine rich repeat	148	207	IPR001611	GO:0005515
	Vifa1g02147	614	ProSitePatterns	Protein kinases ATP-binding region signature.	321	344	IPR017441	GO:0005524
	Vifa1g02147	614	ProSiteProfiles	Protein kinase domain profile.	315	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02147	614	SMART	serkin_6	315	568	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02147	614	Pfam	Protein kinase domain	317	554	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g02147	614	Pfam	Leucine rich repeat N-terminal domain	33	70	IPR013210	-
	Vifa1g02147	614	FunFam	Leucine-rich repeat receptor-like protein kinase	31	189	-	-
	Vifa1g02147	614	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	397	614	-	-
	Vifa1g02147	614	Gene3D	Ribonuclease Inhibitor	33	145	IPR032675	-
	Vifa1g02147	614	Gene3D	Ribonuclease Inhibitor	146	243	IPR032675	-
	Vifa1g02147	614	FunFam	LRR receptor-like serine/threonine-protein kinase EFR	286	396	-	-
	Vifa1g02147	614	SUPERFAMILY	Protein kinase-like (PK-like)	290	595	IPR011009	-
	Vifa1g02147	614	Gene3D	Phosphorylase Kinase; domain 1	277	396	-	-
	Vifa1g02147	614	Gene3D	Transferase(Phosphotransferase) domain 1	397	614	-	-
	Vifa1g02147	614	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	444	456	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g02147	Vifa-Chr1	343405430	343408586	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g02147	77	612	Receptor kinase-like Gene Family	AT3G47570	41.146	1.43e-134	416

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XII-1	Vifa1g02147		Pkinase	1.1e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g02147	-		-	mtr:25482466	676.011