Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02144 ATGTCAATGGATGTGATGGCAAATGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACTACTCTTGCGGTTAGTGTTCCATGCAGTAGCTTGCTGACTATAGTGACAGTTAGATGTGGGCATTGTGCCAATTTGCTTTCGGTTAACATGGGAGCATCACTTCAATCTTTTCCACCTCAACAAGACCCTCAGAAACAGCAGCTTGTAAGCTGTCACCAAGAACCAATTAGCAGGAAGGAAGTTGTAGGATCATCATCATCTTCTTCTTCAAAATGCAAAGCATTTCAGCCTCATGAGCAACCTAGGACTCCTCCCATTCGCCCTCCTGAGAAGAGACAACGTGTACCTTCTGCTTATAATCGGTTCATTAAGTAA 378 0.4339 MSMDVMANERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQSFPPQQDPQKQQLVSCHQEPISRKEVVGSSSSSSSKCKAFQPHEQPRTPPIRPPEKRQRVPSAYNRFIK 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02144 125 MobiDBLite consensus disorder prediction 78 125 - -
Vifa1g02144 125 PANTHER PROTEIN YABBY 6-RELATED 1 125 IPR006780 GO:0007275
Vifa1g02144 125 MobiDBLite consensus disorder prediction 78 97 - -
Vifa1g02144 125 Pfam YABBY protein 7 125 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02144 Vifa-Chr1 342158739 342161916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02144 1 125 C2C2-YABBY Transcription Factor Family AT1G08465 58.462 6.89e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vifa1g02144 YABBY 2.3e-41 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02144 K25796 - gmx:100500026 180.644