Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02141 ATGAGAATTTTAATGACTTGTTTTCTCTGCTTTGCAATTCCAGTGTTGATGCATTACATGCTCTCAGCAACAAACGCTCTTTCTTTGAGTTCATACACCGATGAACTTGCTTTGCTAGCTTTGAAGGAAAAGCTTACAAACAGTGTGCCTGATTCTCTACCATCATGGAATCAGTCTTTGCATTTGTGTGAATGGCAGGGTGTCACATGTGGCCGTCGTCACATGAGAGTATCTGTCTTGCATTTGGAGAACCAAACTTTGGGTGGCACTCTTGGTCCATCCTTAGGAAATCTCACATTTCTCAGAATACTCAAACTTACCAACATTAGTTTGCATGGTGAAATTCCAAAACAAGTTGGTCGATTGAAGCGATTGCGAAAGCTTTCCTTAAGCAACAACAAACTTGAAGGAGAATTTCCTATGGAGCTGTCCAACTGCACAAATCTACATGTAATTGAATTGTATCACAATCACCTCACTGGAAGAGTCCCTTCATGGTTTGGATCAATGCAACTTATTTTGTTAAACCTTGGTATCAATAATCTAGTTGGCACTATTCCACCTTCCTTGGGAAATATAACATTTCTCAATGTTTTATTTCTTTCATGGAATCACCTGGCAGGAAACATACCTCATGCTTTTGGTAAGTTGTCGGAATTGAAAATATTGGCTCTGAATTCAAATAATTTGTCAGGTGAAGTCCCTCATTCTCTTTATAATCTATCAAATATTCAAAATTTTGATCTTGGGGAAAACAACTTATTTGGTAGTCTACCATCAGATATGATTCTGGCTTTTCCCAATCTTGAAGGACTATATGTATCAGGAAACCAAATAAGCGGAACTTTTCCTTCTTCAATGTCTAATCTCACTGAATTGCAAATAATTGATATAGGAGACAATTTTTTTAATGGGCCAATACCTCTTACTTTAGGTCGATTAAATAAACTTTACAGTTTTAATATTGTGAATAATAATTTTGGAAGTGGGGGTGCTCATGATTTAGACTTCCTTTCTTCTTTAACCAATTGTACTCAACTATCAAGACTCCTTTTGGATCACAATAAATTTGGTGGTAAGTTGCCTAACCTTATAGGAAACCTTTCCATCAACCTCAAACAATTTAAGCTAGCAGAAAATCAAATATATGGAGTGATACCTGAAGGAATTGGACAACTAATTGGTTTAACTTCCTTAGACATGGGAAGCAATTCCCTCGAAGGATCAATTCCAAATTCAATTGGAAAGCTTAAGAATCTAGTAAGTTTGGTCTTGCAAGCAAACAAATTATCTAGTAACATTCCCACAAATATTGGAAATCTTACTATCTTGTCTGACTTATATCTTTCGGGCAATAAATTGGAAGGAAGGATTCCATTTTCCCTTAGATATTGCACCCAATTGCAGAAATTAAGTATTGCTGAAAATAAATTGAGTGGTGATTTACCAAATCAAACATTTAGTTATCTAGATGGTTTAATAAATATTGTCTTGTCAAACAACTATTTTACTGGTCCCATTCCTTCAGAGTTTGGTTATTTGAAGCAACTCTCAATCTTGAGTCTTGAGTCAAATCATTTGTCTGGTGAAATTCCTAAGAGTCTAGCTTCTTGCATATCATTGATAGGTCTTGGATTGGGGAGTAACTTCCTACATGGAAGTATACCTTTGTTCTTGGCCTCTTTAAAATCCTTAGAAGCCTTAGACATTTCTCACAACAATTTCTCAAGTACAATCCCCTTTGAACTAGAAGATCTGACATTCTTGAAAATTTTAGACTTGTCATTTAACAATCTGTGTGGTGAAGTTCCCAAAGAAGGTGTCTTTAGCAATGCCACAAAGGTTTCACTGATTGGAAATAAGAACCTTTGTGGTGGGATATCTCAATTGAAGCTCCCACCGTGTTTTAAGAAACCCTCCAAGAAACACAAAAGATCTCTAAAAAAGAAACTTATCATCATCAGTGTATTTGGTGGGATTTTGATCTCTTTCGTAGCGTTTACAATTGTCCATGTTCTCACAAGAAAGTCCACAAAGTTACCTTCTTCGCCATCTCTGCAAAATAGGGCACTGAGAGTTACATATGGAGAGTTACATGAAGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGAACTGGAAGCTTTGGCTCGGTTTATAGAGGATCTCTTCACAACTTTGAAAGACCTATTGCTGTAAAGGTGTTGAATCTTGAAACACGCGGGGCAGCAAAGTGTTTCGTGGCAGAATGCAGTGCTTTAGGGCCAGGAAATCATAGTCTCAGCCTCACAAAAAGGGTGGACATTGCTCTTGATGTAGCTCATGCTTTGGATTATCTTCACCATGATGAAGATCAAGTTGTAGTACACTGTGATATTAAACCAAGCAATGTTCTTCTTGATGAAGAGATGGTAGCTCACTTGGGTGACTTTGGCTTAGCAAGGCTGATTCATGGATCCACAGGACATTCAAGTAAAGACCAAATTGACTCCTCAACAATTAAAGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCTGGTGGTCCGGTAACACTAGAGGGAGATATTTACAGCTATGGAATTCTGTTGTTGGAAATGCTTACCGGAAAAAGACCAACAGATAATATGTTTTATGAAAATCTTAGTCTACACAAATTGTGTAAGATGAAAATTTCCGAAGAAATTCTTGACATTGTAGATTCACGTTTGATTATGCTAAATGTTGAAGATGAGACATGGATTGTAGAAAACAACATTAAGGAGTGTCTAGTGATGTTTGCTAAAATTGGAATCGCGTGTTCTGAAGAATTTCCTACTCAGAGAATGCTCCCAAAACACGTCATACTGAAGTTGCTTGAAATTAAACACAAGTTATCCCACTAG 2886 0.3704 MRILMTCFLCFAIPVLMHYMLSATNALSLSSYTDELALLALKEKLTNSVPDSLPSWNQSLHLCEWQGVTCGRRHMRVSVLHLENQTLGGTLGPSLGNLTFLRILKLTNISLHGEIPKQVGRLKRLRKLSLSNNKLEGEFPMELSNCTNLHVIELYHNHLTGRVPSWFGSMQLILLNLGINNLVGTIPPSLGNITFLNVLFLSWNHLAGNIPHAFGKLSELKILALNSNNLSGEVPHSLYNLSNIQNFDLGENNLFGSLPSDMILAFPNLEGLYVSGNQISGTFPSSMSNLTELQIIDIGDNFFNGPIPLTLGRLNKLYSFNIVNNNFGSGGAHDLDFLSSLTNCTQLSRLLLDHNKFGGKLPNLIGNLSINLKQFKLAENQIYGVIPEGIGQLIGLTSLDMGSNSLEGSIPNSIGKLKNLVSLVLQANKLSSNIPTNIGNLTILSDLYLSGNKLEGRIPFSLRYCTQLQKLSIAENKLSGDLPNQTFSYLDGLINIVLSNNYFTGPIPSEFGYLKQLSILSLESNHLSGEIPKSLASCISLIGLGLGSNFLHGSIPLFLASLKSLEALDISHNNFSSTIPFELEDLTFLKILDLSFNNLCGEVPKEGVFSNATKVSLIGNKNLCGGISQLKLPPCFKKPSKKHKRSLKKKLIIISVFGGILISFVAFTIVHVLTRKSTKLPSSPSLQNRALRVTYGELHEATNGFSSSNLVGTGSFGSVYRGSLHNFERPIAVKVLNLETRGAAKCFVAECSALGPGNHSLSLTKRVDIALDVAHALDYLHHDEDQVVVHCDIKPSNVLLDEEMVAHLGDFGLARLIHGSTGHSSKDQIDSSTIKGTIGYVPPEYGAGGPVTLEGDIYSYGILLLEMLTGKRPTDNMFYENLSLHKLCKMKISEEILDIVDSRLIMLNVEDETWIVENNIKECLVMFAKIGIACSEEFPTQRMLPKHVILKLLEIKHKLSH 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02141 961 SMART LRR_sd22_2 217 243 - -
Vifa1g02141 961 SMART LRR_sd22_2 465 492 - -
Vifa1g02141 961 SMART LRR_sd22_2 122 151 - -
Vifa1g02141 961 SMART LRR_sd22_2 266 292 - -
Vifa1g02141 961 SMART LRR_sd22_2 562 583 - -
Vifa1g02141 961 SMART LRR_sd22_2 586 614 - -
Vifa1g02141 961 SMART LRR_sd22_2 417 436 - -
Vifa1g02141 961 ProSiteProfiles Protein kinase domain profile. 705 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02141 961 ProSitePatterns Protein kinases ATP-binding region signature. 711 734 IPR017441 GO:0005524
Vifa1g02141 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Vifa1g02141 961 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 72 333 - -
Vifa1g02141 961 Gene3D Ribonuclease Inhibitor 31 171 IPR032675 -
Vifa1g02141 961 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 748 961 - -
Vifa1g02141 961 Gene3D Transferase(Phosphotransferase) domain 1 757 961 - -
Vifa1g02141 961 Pfam Protein kinase domain 764 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02141 961 Gene3D Phosphorylase Kinase; domain 1 685 756 - -
Vifa1g02141 961 Pfam Leucine rich repeat 467 527 IPR001611 GO:0005515
Vifa1g02141 961 Pfam Leucine rich repeat 371 430 IPR001611 GO:0005515
Vifa1g02141 961 Gene3D Ribonuclease Inhibitor 172 330 IPR032675 -
Vifa1g02141 961 SMART serkin_6 705 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02141 961 FunFam LRR receptor-like serine/threonine-protein kinase EFR 334 641 - -
Vifa1g02141 961 SUPERFAMILY L domain-like 59 364 - -
Vifa1g02141 961 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Vifa1g02141 961 SMART LRR_typ_2 514 538 IPR003591 -
Vifa1g02141 961 SMART LRR_typ_2 266 290 IPR003591 -
Vifa1g02141 961 SMART LRR_typ_2 417 441 IPR003591 -
Vifa1g02141 961 SMART LRR_typ_2 562 583 IPR003591 -
Vifa1g02141 961 SMART LRR_typ_2 586 611 IPR003591 -
Vifa1g02141 961 SMART LRR_typ_2 217 241 IPR003591 -
Vifa1g02141 961 SMART LRR_typ_2 122 150 IPR003591 -
Vifa1g02141 961 SUPERFAMILY Protein kinase-like (PK-like) 678 944 IPR011009 -
Vifa1g02141 961 Gene3D Ribonuclease Inhibitor 331 644 IPR032675 -
Vifa1g02141 961 PANTHER OS04G0122200 PROTEIN 103 212 - -
Vifa1g02141 961 SUPERFAMILY RNI-like 284 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02141 Vifa-Chr1 341315464 341319009 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02141 33 959 Receptor kinase-like Gene Family AT3G47570 40.688 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g02141 Pkinase 1.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02141 - - mtr:25482466 1132.47