Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02140 ATGAGAATTTCTATTACCTTTTTTTCCTTCTTTATTAGTCAAGTGTCAGTGTATTGCATGCCATCAGCGACATATACACTTGCTTTGAGTTCGGAGACCGATAAGCTTGCTTTGCTTGCTTTGAAAGAAAAACTTACAAATGGTGTGTCTGATTCTCTTCCATCATGGAATGAGTCTCTACATTTCTGTGAATGGCAGGGTGTCACATGTGGCCGTCGTCACATGAGAGTCTCTTTCTTGAAATTAGAGAATCAAACATTGGGTGGTACTCTTGGTCCATCCATAGGAAATCTCACATTTCTTAGAATACTTAGGCTTTCAAATATCGGATTGCATGGTGAAATTCCAAAACAAATTGGTCATTTGAAGCGATTGGAAGTTCTTCACTTAAGCAACAACCATCTTCAAGGAGAGATTCCTTTTGAGCTAACTAACTGCACAAATATTAAGGTAATTTATTTAGCGTCCAATCATCTCATAGGAAGAGTTCCCGCTTGGTTTGGATCGATGATGCAACTTATAGAGTTGAATCTCCGTGATAATAATCTCGTGGGAACTATTCCATCTTCTCTGGGAAATGTTTCATCACTCCAAAATATAACACTTGCTTACAATCACTTGGAAGGAAGCATACCTTATTCTTTGGGTAGGATAACAAGTTTAAAACAAATCATTTTTGGTTCAAATATACTGTCAGGGGAAATTCCTCATTCTCTTTACAACCTATCACATATTCAAATTTTTGATCTTGGGGAAAACAAGCTATTAGGTAGTCTTCCATCAAATTTGAATCTCATTTTTCCCAATGTTCAGAAGTTCTTTATAGGAGATAACCAAATAAGAGGAACTTTTCCATCTTCAATATCCAACCTTAGTGAGTTGCAAGGCCTTGATATATCATTGAATGCTTTTAAAGGACCAATACCTCTTACTTTGGGTAGATTAAATAAACTTGAGATTTTTGATATTGGCTTTAATAATTTTGGAAGTGATTTGGACTTCCTTTCTTCTTTAACAAATTGTACTCAACTAACAATGCTCATTTTGGGCCAAAATAAATTTGGTAGTAAGTTGCCTGACCTCATGGGAAACCTTTCTATAAATCTCAGTTTTATCGATTTGGGGGTTAATCAAATATATGGAGTGATACCGGAAAGAATTGGACAACTAATCGGTTTAACTTACTTAGACATGGGAAGCAATTCCCTCCAAGGATCAATTCCAAATTCAATTGGAAAGCTTAAGAATCTAGTAAGATTGGTCTTGCAAGAAAACAAACTATCTGGTAACATTCCTATAAATATTGGAAATCTTACTATCTTGTCTGAATTATATCTTTCGGGCAATAAATTGGAAGGAAGGATTCCATTTTCCCTTAGATATTGCACCCAATTGCAGAAATTAAGTATTGCTGAAAATAAATTGAGTGGTGATTTACCAAATCAAACATTTAGTTATCTAGATGGTTTAATATATATCTATTTGCATGACAACTCCTTGACTGGATCTATTCCTTCAGAGTTTGGTGGCTTGAAGCATCTTTCACAATTGTATCTTGACTCAAATAATTTGTCCGGTGAAATCCCTAAGGATCTTGCTGCTTGTTTGGCATTAACAGAACTCTCGTTGAGGGGAAACTCTTTTCATGGAAAAATACCTTCGTTCTTTGGTTCTTTAAGATCCCTTGAAATCTTAGATATTTCTAAAAACAATTTCTCAAGCACAATCCCTTCTGAACTAAAAAATCTCACACTTCTAAATACTTTGAACTTATCTTTTAATAGTCTTTATGGTGAGGTTCCCATAGGCGGTGTCTTTAGCAATGTCACCAAAATTTCATTAATTGGTAACAAGAACCTTTGTGGAGGGATACCTCAATTGAAGCTTCCAAAATGCTATATGGATTCCTCTAAGACACACAAACACTCTCTAAAAAAGAAACTTATCATCATCATCATCATCATTAGTGTAATTGTCGGGGTTTTGATCTCTTTCATAGCGTTTACAATTGTCCATGTTCTCACAAGAAAGTCCACAAAGTTACCTTCTTCGCCATCTCTGCAAAATAGGGCACTGAGAGTTACTTATGGAGAGTTACATGAAGCAACCAATGGATTTTCTTCATCCAATTTGGTAGGAACTGGAAGCTTTGGCTCGGTTTATAGAGGATCTCTTCACAACTTTGAAAGACCAATTGCTGTAAAGGTGTTGAATCTTGAAACACGCGGGGCAGCAAAGTGTTTCGTGGCAGAATGCAGTTCTTTAGGTAAGATGAAACACCGGAATCTTGTGAAGATCCTAACTTGTTGTTCAAGTGTTGATTACAAGGGTGAAGATTTCAAAGCTATTGTTTTCGAGTTCATGCTTAATGGGAGTCTTGAAAATTTGTTGCATGATAATGAAGGGTCTGAAAATCATAGTCTCGGCCTCACACAAAGGGTAGACATTGCTCTTGATGTAGCTCATGCATTGGATTATCTTCACCATGATGAAGATCAAGTTGTAGTACACTGTGATATTAAACCAAGCAACGTTCTTCTTGATCAAGAGATGGTAGCTCACTTGGGTGACTTTGGCTTAGCAAGGCTGATTCATGGATCCACAGGACATTCAAGTAAAGAACAAGTTGACTCCTCAACAATTAAAGGAACTATAGGATATGTTCCTCCTGAATATGGAGCTGGTGGTCCGGTAACACCAGAGGGAGATATCTACAGCTATGGAATTCTGTTGTTGGAAATGCTTACTGGAAAGAGACCAACAGATAATATGTTTTATGAAGATCTTAGTCTCCACAGATTGATTAAGATGAAAATTCCTGAAGAAATTCTTGACATAGTAGATTCACGTTTGGTTATTCCATTTGTTGAAGATCAGACAAAAAACAACATAAAGGAGTGTCTAGTGATGTTTGCTGAAATAGGAGTTGCATGTTCTGAAGAATTTCCTACTCAAAGAATGCTCACAAAACATGTCATAATGAAGTTGATTGAAATTAAACAGAAGTTGTCCCGCTAG 3018 0.3638 MRISITFFSFFISQVSVYCMPSATYTLALSSETDKLALLALKEKLTNGVSDSLPSWNESLHFCEWQGVTCGRRHMRVSFLKLENQTLGGTLGPSIGNLTFLRILRLSNIGLHGEIPKQIGHLKRLEVLHLSNNHLQGEIPFELTNCTNIKVIYLASNHLIGRVPAWFGSMMQLIELNLRDNNLVGTIPSSLGNVSSLQNITLAYNHLEGSIPYSLGRITSLKQIIFGSNILSGEIPHSLYNLSHIQIFDLGENKLLGSLPSNLNLIFPNVQKFFIGDNQIRGTFPSSISNLSELQGLDISLNAFKGPIPLTLGRLNKLEIFDIGFNNFGSDLDFLSSLTNCTQLTMLILGQNKFGSKLPDLMGNLSINLSFIDLGVNQIYGVIPERIGQLIGLTYLDMGSNSLQGSIPNSIGKLKNLVRLVLQENKLSGNIPINIGNLTILSELYLSGNKLEGRIPFSLRYCTQLQKLSIAENKLSGDLPNQTFSYLDGLIYIYLHDNSLTGSIPSEFGGLKHLSQLYLDSNNLSGEIPKDLAACLALTELSLRGNSFHGKIPSFFGSLRSLEILDISKNNFSSTIPSELKNLTLLNTLNLSFNSLYGEVPIGGVFSNVTKISLIGNKNLCGGIPQLKLPKCYMDSSKTHKHSLKKKLIIIIIIISVIVGVLISFIAFTIVHVLTRKSTKLPSSPSLQNRALRVTYGELHEATNGFSSSNLVGTGSFGSVYRGSLHNFERPIAVKVLNLETRGAAKCFVAECSSLGKMKHRNLVKILTCCSSVDYKGEDFKAIVFEFMLNGSLENLLHDNEGSENHSLGLTQRVDIALDVAHALDYLHHDEDQVVVHCDIKPSNVLLDQEMVAHLGDFGLARLIHGSTGHSSKEQVDSSTIKGTIGYVPPEYGAGGPVTPEGDIYSYGILLLEMLTGKRPTDNMFYEDLSLHRLIKMKIPEEILDIVDSRLVIPFVEDQTKNNIKECLVMFAEIGVACSEEFPTQRMLTKHVIMKLIEIKQKLSR 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02140 1005 Pfam Protein kinase domain 708 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02140 1005 Gene3D Ribonuclease Inhibitor 318 641 IPR032675 -
Vifa1g02140 1005 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Vifa1g02140 1005 FunFam LRR receptor-like serine/threonine-protein kinase EFR 677 787 - -
Vifa1g02140 1005 Pfam Leucine rich repeat 464 524 IPR001611 GO:0005515
Vifa1g02140 1005 Pfam Leucine rich repeat 538 596 IPR001611 GO:0005515
Vifa1g02140 1005 Gene3D Phosphorylase Kinase; domain 1 668 787 - -
Vifa1g02140 1005 SUPERFAMILY Protein kinase-like (PK-like) 679 987 IPR011009 -
Vifa1g02140 1005 Gene3D Transferase(Phosphotransferase) domain 1 788 1005 - -
Vifa1g02140 1005 FunFam Leucine-rich repeat receptor-like protein kinase 31 189 - -
Vifa1g02140 1005 PANTHER OS04G0122200 PROTEIN 216 1000 - -
Vifa1g02140 1005 Pfam Leucine Rich repeats (2 copies) 123 163 IPR025875 -
Vifa1g02140 1005 SUPERFAMILY RNI-like 268 602 - -
Vifa1g02140 1005 SMART LRR_typ_2 438 462 IPR003591 -
Vifa1g02140 1005 SMART LRR_typ_2 390 414 IPR003591 -
Vifa1g02140 1005 SMART LRR_typ_2 511 535 IPR003591 -
Vifa1g02140 1005 SMART LRR_typ_2 583 608 IPR003591 -
Vifa1g02140 1005 SMART LRR_typ_2 487 510 IPR003591 -
Vifa1g02140 1005 SMART LRR_typ_2 122 146 IPR003591 -
Vifa1g02140 1005 SMART LRR_typ_2 559 582 IPR003591 -
Vifa1g02140 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Vifa1g02140 1005 FunFam Lrr receptor-like serinethreonine-protein kinase gso2 265 340 - -
Vifa1g02140 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 788 1005 - -
Vifa1g02140 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 190 264 - -
Vifa1g02140 1005 ProSitePatterns Protein kinases ATP-binding region signature. 712 735 IPR017441 GO:0005524
Vifa1g02140 1005 SMART serkin_6 706 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02140 1005 ProSiteProfiles Protein kinase domain profile. 706 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02140 1005 Pfam Leucine Rich Repeat 393 414 IPR001611 GO:0005515
Vifa1g02140 1005 FunFam Inactive leucine-rich repeat receptor-like protein kinase 341 632 - -
Vifa1g02140 1005 Gene3D Ribonuclease Inhibitor 30 312 IPR032675 -
Vifa1g02140 1005 SUPERFAMILY L domain-like 58 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02140 Vifa-Chr1 341123339 341127055 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02140 26 1003 Receptor kinase-like Gene Family AT3G47570 43.030 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g02140 Pkinase 9.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02140 - - mtr:25482466 1249.96