Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02137 ATGAAATTTCTGAAGCCGAACAAAGTCGTGATCGTCCTTCAAGGTCGATATGCAGGGAAGAAAGTTGTGATCATGAAGAACTTTGACGACAGAACCTGTGAACGTGCTTATAGTCATGCTTTGATGGCTCTGGGATGGGTTTGGAAATTAGCAGTGGTGATGGTGAAAATTGATTGTTTGGATTTAGGATTGGGGTTGGTGTGGAAGATTATGGTTAGAGAAAACAAGTGGTATGAGAGGATGGTTAATCTGAGAGATGAAGAGTGTTTAAAGAACCGTGTTGCACTGTTGAGAGAGAGAGAGAGGAGGAGTTTACAAAGGGATGTGCGCGATTGGTGGAGTACGGCGCGAATGTTAGTCGTGGAGAGGATATCCATGGAACTGCGGTGGCGAGCTGAGTCGGAGTTGAACGGAGTTGTCGATGACTGA 429 0.4545 MKFLKPNKVVIVLQGRYAGKKVVIMKNFDDRTCERAYSHALMALGWVWKLAVVMVKIDCLDLGLGLVWKIMVRENKWYERMVNLRDEECLKNRVALLRERERRSLQRDVRDWWSTARMLVVERISMELRWRAESELNGVVDD 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02137 142 PANTHER 60S RIBOSOMAL PROTEIN L27 2 43 IPR001141 GO:0003735|GO:0005840|GO:0006412
Vifa1g02137 142 SUPERFAMILY Translation proteins SH3-like domain 1 33 IPR008991 -
Vifa1g02137 142 Gene3D - 1 44 IPR038655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02137 Vifa-Chr1 340991817 340996489 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02137 1 43 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 67.442 2.32e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02137 K02901 - twl:119980064 68.9366