Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02135 ATGGATGAGGTTCCTGTGTTGGAAGAGAATGAAACAAAGTCTGAGGCGCATTTGACTTCTGCTGCTGCTTTTGTGGAAGGTGGAATTCAGGATGCTTGTGATGATTCTTGCAGTATATGCCTTGAATCCTTCTGTGACAGTGATCCTTCTACGGTGACGAGTTGCAAGCACGAGTTTCATCTTCAATGTATTCTGGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAATCTATTAGTCTCAAGGATCCCATGAGTCAGGAATTGCTTGAGGGAGTTGAGAGGGAGAGAAACTTTAGGTTAAATCCGTCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCTGCAGCAGCAATGGGGCGAGCACGCCATATTGCGAGAAGGGAAGGCCAGAGAAATAGGTCATCAGCTCAAGGTCGCCCACAGTATTTGGTATTTTCAGCTCATCCCAATTCACCTCCTACGGCTCCTGCATCTTCCTCTCCATCTCAGAGAGGGGTTGGTGAACCAACTCACGCCACTGGAGAAGACACACCACAGCTCACTTTGATTCCTCCAGTTCAAACTGACCAGGTTTCTGCTTCAGGATCTGGGTCTACTGCTCCTGCTACCGACAATCAGGGATTGTCGTTTAACAACAGGAGATCTCCTAGTCAGTCTTCTCCAAGTAGCCAAGACAGGGCAGGACCATCAGAACTCCAGTCATTTTCAGAATCTCTGAAATCTAAACTTAATGCGGTGTCAACAAGATACAAAGAGTCCATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGGTGGTTCTCTCGAAATAGCCCTATGTCTGACCTTGGATCTGAAGTTAAGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGCATGATGGAACGCTTGGAGACTAGAGAGAATGATAGAAGCAATGGCAATTCTGCTCCAAGTTCTAGTTCAAATTAA 1041 0.4621 MDEVPVLEENETKSEAHLTSAAAFVEGGIQDACDDSCSICLESFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQSISLKDPMSQELLEGVERERNFRLNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPQYLVFSAHPNSPPTAPASSSPSQRGVGEPTHATGEDTPQLTLIPPVQTDQVSASGSGSTAPATDNQGLSFNNRRSPSQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNSPMSDLGSEVKREVNAGIATVSRMMERLETRENDRSNGNSAPSSSSN 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02135 346 Pfam Ring finger domain 35 77 IPR001841 -
Vifa1g02135 346 MobiDBLite consensus disorder prediction 204 278 - -
Vifa1g02135 346 FunFam E3 ubiquitin-protein ligase RHF2A 8 111 - -
Vifa1g02135 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 86 IPR013083 -
Vifa1g02135 346 SMART ring_2 37 77 IPR001841 -
Vifa1g02135 346 MobiDBLite consensus disorder prediction 177 197 - -
Vifa1g02135 346 MobiDBLite consensus disorder prediction 326 346 - -
Vifa1g02135 346 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 15 86 - -
Vifa1g02135 346 MobiDBLite consensus disorder prediction 174 278 - -
Vifa1g02135 346 SUPERFAMILY RING/U-box 30 84 - -
Vifa1g02135 346 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02135 Vifa-Chr1 340312947 340315894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02135 34 85 C3H Transcription Factor Family AT4G00335 44.231 3.96e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02135 K19043 - gmx:100780275 543.502