Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02134 ATGTTGGTGATTTACATGTTCTCAGCAACAAACGCTCTTTCTTTGAGTTCATACACCGATGAACTTGCTTTGCTAGCTTTGAAGGAAAAACTTACAAACAGTGTGCCTGATTCTCTACCATCATGGAATCAGTCTTTGCATTTGTGTGAATGGCAGGGTGTCACATGTGGCCGTCGTCACATGAGAGTATCTGTCTTGCATTTGGAGAACCAAACTTTGGGTGGCACTCTTGGTCCATCCTTAGGAAATCTCACATTTCTCAGAATACTCAAACTTACCAACATTAGTTTGCATGGTGAAATTCCAAAACAAGTTGGTCGATTGAAGCGATTGCGAAAGCTTTCCTTAAGCAACAACAAACTTGAAGGAGAATTTCCTATGGAGCTGTCCAACTGCACAAATCTACATGTAATTGAATTGTATCACAATCACCTCACTGGAAGAGTCCCTTCATGGTTTGGATCAATGCAACTTATTTTGTTAAACCTTGGTATCAATAATCTAGTTGGCACTATTCCACCTTCCTTGGGAAATATAACATTTCTCAATGTTTTATTTCTTTCATGGAATCACCTGGCAGGAAACATACCTCATGCTTTTGGTAAGTTGTCGGAATTGAAAATATTGGCTCTGGATTCAAATAATTTGTCAGGTGAAGTCCCTCATTCTCTTTATAATCTATCAAATATTCAAAATTTTGATCTTGGGGAAAACAACTTATTTGGTAGTCTACCATCAGATATGATTCTGGCTTTTCCCAATCTTGAAGGACTATATGTATCAGGAAACCAAATAAGCGGAACTTTTCCTTCTTCAATGTCTAATCTCACTGAATTGCAAATAATTGATATAGGAGACAATTTTTTTAATGGGCCAATACCTCTTACTTTAGGTCGATTAAATAAACTTTACAGTTTTAATATTGTGAATAATAATTTTGGAAGTGGGGGTGCTCATGATTTAGACTTCCTTTCTTCTTTAACCAATTGTACTCAACTATCAAGACTCCTTTTGGATCACAATAAATTTGGTGGTAAGTTGCCTAACCTTATAGGAAACCTTTCCATCAACCTCAAACAATTTCAGCTAGCAGAAAATCAAATATATGGAGTGATACCTGAAGGAATTGGACAACTAATTGGTTTAACTTCCTTAGACATGGGAAGCAATTCCCTCGAAGGATCAATTCCAAATTCAATTGGAAAGCTTAAGAATCTAGTAAGTTTGGTCTTGCAAGCAAACAAATTATCTAGTAACATTCCCACAAATATTGGAAATCTTACTATCTTGTCTGACTTATATCTTTCGGGCAATAAATTGGAAGGAAGGATTCCATTTTCCCTTAGATATTGCACCCAATTGCAGAAATTAAGTATTGCTGAAAATAAATTGAGTGGTCATTTACCAAATCAAACATTTAGTTATCTAGATGGTTTAATATATATTGTCTTGTCAAACAACTATTTTACTGGTCCCATTCCTTCAGAGTTTGGTTATTTGAAGCAACTTTCAATCTTGAGTCTTGAGTCAAATCATTTGTCTGGTGAAATTCCTAAGAGTCTAGCTTCTTGCATATCATTGATAGGTCTTGGATTGGGGAGTAACTTCCTACATGGAAGTATACCTTTGTTCTTGGCCTCTTTAAAATCCTTAGAAGCCTTAGACATTTCTCACAACAATTTCTCAAGTACAATCCCCTTTGAACTAGAAGATCTGACATTCTTGAAAATTTTAGACTTGTCATTTAACAATCTGTGTGGTGAAGTTCCCAAAGAAGGTGTCTTTAGCAATGCCACAAAGGTTTCACTGATTGGAAATAAGAACCTTTGTGGTGGGATATCTCAATTGAAGCTCCCACCGTGTTTTAAGAAACCCTCCAAGAAACACAAAAGATCTCTAAAAAAGAAACTTATCATCATCAGTGTATTTGGTGGGATTTTGATCTCTTTCGTAGCGTTTACAATTGTCCATGTTCTCACAAGAAAGTCCACAAAGTTACCTTCTTCGCCATCTCTGCAAAATAGGGCACTGAGAGTTACATATGGAGAGTTACATGAAGCAACCAACGGATTTTCTTCATCCAATTTGGTAGGAACTGGAAGCTTTGGCTCGGTTTATAGAGGATCTCTTCACAACTTTGAAAGACCTATTGCTGTAAAGGTGTTGAATCTTGAAACACGCGGGGCAGCAAAGTGTTTCGTGGCAGAATGCAGTGCTTTAGGGCCAGGAAATCATAGTCTCAGCCTCACAAAAAGGGTGGACATTGCTCTTGATGTAGCTCATGCTTTGGATTATCTTCACCATGATGAAGATCAAGTTGTAGTACACTGTGATATTAAACCAAGCAATGTTCTTCTTGATGAAGAGATGGTAGCTCACTTGGGTGACTTTGGCTTAGCAAGGCTGATTCATGGATCCACAGGACATTCAAGTAAAGACCAAATTGACTCCTCAACAATTAAGGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCTGGTGGTCCGGTAACACTAGAGGGAGATATTTACAGCTATGGAATTCTGTTGTTGGAAATGCTTACCGGAAAAAGACCAACAGATAATATGTTTTATGAAAATCTTAGTCTACACAAATTGTGTAAGATGAAAATTTCCGAAGAAATTCTTGACATTGTAGATTCACGTTTGATTATGCTAAATGTTGAAGATGAGACATGGATTGTAGAAAACAACATTAAGGAGTGTCTAGTGATGTTTGCTAAAATTGGAATCGCGTGTTCTGAAGAATTTCCTACTCAGAGAATGCTCCCAAAACACGTCATACTGAAGTTGCTTGAAATTAAACACAAGTTATCCCACTAG 2844 0.3713 MLVIYMFSATNALSLSSYTDELALLALKEKLTNSVPDSLPSWNQSLHLCEWQGVTCGRRHMRVSVLHLENQTLGGTLGPSLGNLTFLRILKLTNISLHGEIPKQVGRLKRLRKLSLSNNKLEGEFPMELSNCTNLHVIELYHNHLTGRVPSWFGSMQLILLNLGINNLVGTIPPSLGNITFLNVLFLSWNHLAGNIPHAFGKLSELKILALDSNNLSGEVPHSLYNLSNIQNFDLGENNLFGSLPSDMILAFPNLEGLYVSGNQISGTFPSSMSNLTELQIIDIGDNFFNGPIPLTLGRLNKLYSFNIVNNNFGSGGAHDLDFLSSLTNCTQLSRLLLDHNKFGGKLPNLIGNLSINLKQFQLAENQIYGVIPEGIGQLIGLTSLDMGSNSLEGSIPNSIGKLKNLVSLVLQANKLSSNIPTNIGNLTILSDLYLSGNKLEGRIPFSLRYCTQLQKLSIAENKLSGHLPNQTFSYLDGLIYIVLSNNYFTGPIPSEFGYLKQLSILSLESNHLSGEIPKSLASCISLIGLGLGSNFLHGSIPLFLASLKSLEALDISHNNFSSTIPFELEDLTFLKILDLSFNNLCGEVPKEGVFSNATKVSLIGNKNLCGGISQLKLPPCFKKPSKKHKRSLKKKLIIISVFGGILISFVAFTIVHVLTRKSTKLPSSPSLQNRALRVTYGELHEATNGFSSSNLVGTGSFGSVYRGSLHNFERPIAVKVLNLETRGAAKCFVAECSALGPGNHSLSLTKRVDIALDVAHALDYLHHDEDQVVVHCDIKPSNVLLDEEMVAHLGDFGLARLIHGSTGHSSKDQIDSSTIKGTIGYVPPEYGAGGPVTLEGDIYSYGILLLEMLTGKRPTDNMFYENLSLHKLCKMKISEEILDIVDSRLIMLNVEDETWIVENNIKECLVMFAKIGIACSEEFPTQRMLPKHVILKLLEIKHKLSH 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02134 947 SUPERFAMILY L domain-like 18 313 - -
Vifa1g02134 947 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Vifa1g02134 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672|GO:0006468
Vifa1g02134 947 FunFam LRR receptor-like serine/threonine-protein kinase EFR 320 627 - -
Vifa1g02134 947 Pfam Leucine rich repeat N-terminal domain 19 56 IPR013210 -
Vifa1g02134 947 PANTHER UNNAMED PRODUCT 9 521 - -
Vifa1g02134 947 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 734 947 - -
Vifa1g02134 947 Gene3D Transferase(Phosphotransferase) domain 1 743 947 - -
Vifa1g02134 947 Gene3D Ribonuclease Inhibitor 318 630 IPR032675 -
Vifa1g02134 947 SMART serkin_6 691 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02134 947 Pfam Protein kinase domain 750 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02134 947 Pfam Leucine rich repeat 357 416 IPR001611 GO:0005515
Vifa1g02134 947 Pfam Leucine rich repeat 453 513 IPR001611 GO:0005515
Vifa1g02134 947 ProSiteProfiles Protein kinase domain profile. 691 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02134 947 Gene3D Phosphorylase Kinase; domain 1 671 742 - -
Vifa1g02134 947 SUPERFAMILY Protein kinase-like (PK-like) 664 930 IPR011009 -
Vifa1g02134 947 SMART LRR_typ_2 252 276 IPR003591 -
Vifa1g02134 947 SMART LRR_typ_2 500 524 IPR003591 -
Vifa1g02134 947 SMART LRR_typ_2 548 569 IPR003591 -
Vifa1g02134 947 SMART LRR_typ_2 108 136 IPR003591 -
Vifa1g02134 947 SMART LRR_typ_2 403 427 IPR003591 -
Vifa1g02134 947 SMART LRR_typ_2 572 597 IPR003591 -
Vifa1g02134 947 SMART LRR_typ_2 203 227 IPR003591 -
Vifa1g02134 947 SUPERFAMILY L domain-like 357 611 - -
Vifa1g02134 947 Gene3D Ribonuclease Inhibitor 159 317 IPR032675 -
Vifa1g02134 947 Gene3D Ribonuclease Inhibitor 17 158 IPR032675 -
Vifa1g02134 947 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 58 319 - -
Vifa1g02134 947 SMART LRR_sd22_2 451 478 - -
Vifa1g02134 947 SMART LRR_sd22_2 108 137 - -
Vifa1g02134 947 SMART LRR_sd22_2 403 422 - -
Vifa1g02134 947 SMART LRR_sd22_2 203 229 - -
Vifa1g02134 947 SMART LRR_sd22_2 572 600 - -
Vifa1g02134 947 SMART LRR_sd22_2 252 278 - -
Vifa1g02134 947 SMART LRR_sd22_2 548 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02134 Vifa-Chr1 339980418 339983925 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02134 19 945 Receptor kinase-like Gene Family AT3G47570 40.688 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g02134 Pkinase 1.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02134 - - mtr:25482466 1132.09