Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02130 ATGGGGGGGACTTTAAGGTTTACATTTCTTCTTTGTGTTGCTAGCCAAATGTTGGTGTATTATCTCATGCCATCAACAGTTGCTGCTCTTTCTTTGAGTTCAGAGACTGATAAGCTTGCTTTGCTTGCTTTGAAAGAAAAACTTACAAATGGTGTGTCTGATTCTCTTCCATCATGGAATGAGTCTCTACATTTCTGTGAATGGCCGGGTGTTACATGTGGCCGTCGTCACATGAGAGTCTCTTCGTTGCATTTGGAGAACCAAACCTTGGGTGGTTCTCTTGGACCATCCTTGGGAAATTTAACATTTCTGAAATTACTCATGCTTAGAAACCTCGATTTGTATGGTGAAATTCCAGCTCAAATTGGTCGATTGAAGCGATTGCAAGATCTTATCATAGACATCAACAAACTTGAAGGAGAAATTCCTATAGAGCTCTCAAACTGCACAAATCTAAAAGTAATTGAATTGTATCACAATCACCTCAATGGAAGAGTCCCTTCATGGTTTGGATCGATGCAACTTACTTGGTTGAATCTTGGTTTCAATAATCTAGTTGGCACTATTCCACCTTCCTTGGGAAATATTTCATCACTTGGAGCTATGTCACTTTCATCAAATCACTTAGGAGGAAACATACCTCATGCTTTAGGTAAGTTGTCGGGATTAAAAACGTTGTATCTAGATATAAATAATTTGTCGGGTGAAATCCCTCGATCTCTTTACAATCTATCAAATCTTCAATCATTTGTTCTAGTGGAAAACAAGTTATCTGGTAGTCTTCCATCAAATATGAATCTCGCTTTTCCCAATCTTCAATATTTTTTGGTTGGAGGGAACCAAATGACTGGAATTTTTCCATCTTCAATATCCAACATCACCCATTTAAACAGGTTTGATATAGCTCGTAATGCTTTTAATGGGCCAATACCTCTTACTTTGGGTCGATTAAATAAACTTGAGCTGATTGATATCGGTGAAAATAAATTTGGAAGTGGAGGAGCTCATGATTTGGATTTCCTTTCTTCACTAACCAATTGTACTAAATTATCATACCTCTCTTTTTATATGAATAGATTTGGTGGTCAGTTGCCAGATCTTATAGGAAACTTTTCCAACCTCGTTACTCTTGATATTTCATTTAATCAAATATATGGGGCTATACCTGAAAGGATAGGACAACTAATCAATTTAACCAGCTTAGACATTGAGTCCAATTACCTTGAAGGAACAATTCCGAGTTCAATTGGAATGCTCAAGAATATGGAACGACTGGTCTTGCAATCAAACAAACTATCTGGTAATATTCCTTTAAGTATTGGAAATCTTACTATATTGTCTGAAATATATCTTGCTTCCAATAAATTAGAAGGAACCATTCCAGTTACCCTCAGAAATTGTACTAAGTTGGAGAAAGTAATTATGAGTATTAACAATTTGAGTGGTAATATACCCAACCAAACATTTGGCTATCTAAAAGGTTTAATATATCTTGCCTTGTTCAAGAACAGCTTCACCGGTCCTATTCCTTCAGAGCTTGGTAACTTAGAGCAACTTTCTCAATTGTTTCTTTACTCAAATAAGTTATCTGGTGAAATTCCAAATGAACTTGGTGGTTGTTCCTCATTAACAATCTTACGGTTGAGCAAAAATTTCTTCCATGGAAATATACCTTTGTTCTTGGGCTCTTCTATACGATCTCTCGACATGTTAGACCTTTCTAGAAACAATTTCTCAGGAACAATCCCCTTTATACTAGAAAATCTAACATTTTTGAATTATTTAGGCTTGTCTTTCAATAATCTTTATGGAGAGGTTCCCACTGGGGGTGTCTTTAGCAATGCCTCACAAATTTCACTATCCGGAAACAATAACCTCTGTGGGGGTATACCTCAATTGAAGCTTCCTGCATGCTTTAGGAAACACAAGAGATCTCTAAAAAAGAAACATATTATCATCAGTGTTATTGGTGGGATTTTGATTTCTTTTATAGCTTTTTTAGCTGTACATTTTCTCACGGGAAAGCGGAAAAGGTTACCTTCTTCGCCATCATTGCAAAATGAAAGGTTAAGGGTTACATATGGAGATCTACATGAAGCAACCAATGGATTTTCATCTTCAAATTTGGTAGGAGTTGGAAGCTTTGGTTCTGTTTACAGAGGATCTCTTCTCAACTTTGAAGGACCTATTGCTGTAAAGGTGTTGAATCTTGAAACGCGTGGAGCAGCAAAGAGTTTCATTGCGGAATGCAAAGCTCTGGGAAAGATGAAGCACAGAAATCTTGTCAAGATCCTAACTTGTTGTTCAAGCATTGATTACAGTGGTGTAGATTTTAAGGCTATTGTTTTGGACTTCATGCCTAATGGGAGTCTAGAAAATTTGTTGCATAATAATGAAGGGTCTGAAAATGAAAATCATAGTCTCAGCTTCACACAGATGGTCGATATTGCTCTTGATGTAGCTCATGCATTGGATTATCTTCACCATGATGAAGAGGAAGTTGTAGTTCACTGTGATGTCAAGCCAAGCAATGTTCTTCTTGATCAAGATATGGTAGCTCACTTGGGAGACTTTGGCTTAGCTAGGCTCATTCATGGATCAACAGGAAATTCAAGTAAAGATCAAGTTAATTCCTCAACAATTAAAGGAACAATAGGATATCTTCCTCCCGAGTATGGAGCGGGTGGGCTGGTATCATCAGAGGGAGATATCTATAGTTATGGAATTCTGTTGTTGGAAATGCTCACGGGAAAGAGACCAACTGATAATATGTTTTATGAGAATTTTATTCTACACAAATGGTGTAAGATGAAAATTTCTGAAACAATTCTTGACATAGTGGATTCACGTTTGCTTGTGTCATTTGCTGAAGATCAGACATGGATTGTGGAAAACAACATAAAGGAGTGTCTGGTAATGTTTGCTAAAATAGGAGTTGCATGCTCTGAAGAATTTCCTACTCAACGAATGCTTTCAAAAGATGTTATAGTGAAGTTGCTTGAAATTAAACGCAAGTTGCGAGATGATTGA 3030 0.3693 MGGTLRFTFLLCVASQMLVYYLMPSTVAALSLSSETDKLALLALKEKLTNGVSDSLPSWNESLHFCEWPGVTCGRRHMRVSSLHLENQTLGGSLGPSLGNLTFLKLLMLRNLDLYGEIPAQIGRLKRLQDLIIDINKLEGEIPIELSNCTNLKVIELYHNHLNGRVPSWFGSMQLTWLNLGFNNLVGTIPPSLGNISSLGAMSLSSNHLGGNIPHALGKLSGLKTLYLDINNLSGEIPRSLYNLSNLQSFVLVENKLSGSLPSNMNLAFPNLQYFLVGGNQMTGIFPSSISNITHLNRFDIARNAFNGPIPLTLGRLNKLELIDIGENKFGSGGAHDLDFLSSLTNCTKLSYLSFYMNRFGGQLPDLIGNFSNLVTLDISFNQIYGAIPERIGQLINLTSLDIESNYLEGTIPSSIGMLKNMERLVLQSNKLSGNIPLSIGNLTILSEIYLASNKLEGTIPVTLRNCTKLEKVIMSINNLSGNIPNQTFGYLKGLIYLALFKNSFTGPIPSELGNLEQLSQLFLYSNKLSGEIPNELGGCSSLTILRLSKNFFHGNIPLFLGSSIRSLDMLDLSRNNFSGTIPFILENLTFLNYLGLSFNNLYGEVPTGGVFSNASQISLSGNNNLCGGIPQLKLPACFRKHKRSLKKKHIIISVIGGILISFIAFLAVHFLTGKRKRLPSSPSLQNERLRVTYGDLHEATNGFSSSNLVGVGSFGSVYRGSLLNFEGPIAVKVLNLETRGAAKSFIAECKALGKMKHRNLVKILTCCSSIDYSGVDFKAIVLDFMPNGSLENLLHNNEGSENENHSLSFTQMVDIALDVAHALDYLHHDEEEVVVHCDVKPSNVLLDQDMVAHLGDFGLARLIHGSTGNSSKDQVNSSTIKGTIGYLPPEYGAGGLVSSEGDIYSYGILLLEMLTGKRPTDNMFYENFILHKWCKMKISETILDIVDSRLLVSFAEDQTWIVENNIKECLVMFAKIGVACSEEFPTQRMLSKDVIVKLLEIKRKLRDD 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02130 1009 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 270 996 - -
Vifa1g02130 1009 Gene3D Phosphorylase Kinase; domain 1 669 776 - -
Vifa1g02130 1009 SUPERFAMILY L domain-like 346 628 - -
Vifa1g02130 1009 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Vifa1g02130 1009 ProSiteProfiles Protein kinase domain profile. 704 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02130 1009 FunFam Leucine-rich repeat receptor-like protein kinase 34 191 - -
Vifa1g02130 1009 SUPERFAMILY Protein kinase-like (PK-like) 679 997 IPR011009 -
Vifa1g02130 1009 Pfam Protein kinase domain 706 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02130 1009 SUPERFAMILY L domain-like 34 330 - -
Vifa1g02130 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 835 847 IPR008271 GO:0004672|GO:0006468
Vifa1g02130 1009 ProSitePatterns Protein kinases ATP-binding region signature. 710 733 IPR017441 GO:0005524
Vifa1g02130 1009 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 238 333 - -
Vifa1g02130 1009 FunFam LRR receptor-like serine/threonine-protein kinase EFR 675 785 - -
Vifa1g02130 1009 SMART LRR_typ_2 589 614 IPR003591 -
Vifa1g02130 1009 SMART LRR_typ_2 516 540 IPR003591 -
Vifa1g02130 1009 SMART LRR_typ_2 371 395 IPR003591 -
Vifa1g02130 1009 SMART LRR_typ_2 419 443 IPR003591 -
Vifa1g02130 1009 SMART LRR_typ_2 220 244 IPR003591 -
Vifa1g02130 1009 Gene3D Transferase(Phosphotransferase) domain 1 786 1009 - -
Vifa1g02130 1009 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Vifa1g02130 1009 Gene3D Ribonuclease Inhibitor 337 646 IPR032675 -
Vifa1g02130 1009 Gene3D Ribonuclease Inhibitor 217 336 IPR032675 -
Vifa1g02130 1009 SMART serkin_6 704 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02130 1009 Gene3D Ribonuclease Inhibitor 32 216 IPR032675 -
Vifa1g02130 1009 FunFam LRR receptor-like serine/threonine-protein kinase EFR 336 644 - -
Vifa1g02130 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 786 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02130 Vifa-Chr1 339340601 339344022 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02130 32 1006 Receptor kinase-like Gene Family AT3G47570 43.968 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g02130 Pkinase 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02130 - - mtr:25482466 1230.31