Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02108 ATGGCACCAAAACCAACCAAAGCTGAGAAGAAGATATCTTACGACGCCAAGCTGTGCCAGCTTCTTGACGAGTTTTCTCAGATTCTGATTGTTAACGCTGATAATGTTGGATCTAAGCAGCTTCAGAGTATTCGAAGCGGTCTACGTGGGGATTCGGTTGTTCTTATGGGGAAGAACACTATGATGAAGAGATCTGTTAGGATGCATGCTGAGAAGACCGGGAACAATGCTTTTCTTAACCTGATTCCTCTCCTTGTTGGGAATGTTGGTTTGATTTTCACCAAGGGAGACTTGAAGGAGGTTAGCGAAGAGGTTGCCAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCACCTATTGATGTTGTTGTTCCTCCTGGCAACACAGGGCTCGACCCATCCCAGACCTCTTTCTTCCAGGTTCTCAACATTCCCACAAAGATTAACAAGGGTACTGTTGAAATCATCACCCCTGTTGAACTTATCAAGAAGGGGGACAAGGTGGGATCTTCTGAAGCTGCTTTGCTTGCCAAGCTAGGAATTAGGCCCTTTTCATATGGTCTTGTGGTCCTCTCTGTCTATGACAATGGCTCCGTGTTTAACCCTGAGGTTCTCGATCTTACTGATGATGACCTTGTTGCGAAGTTTGCTATTGGTGTGTCCATGGTTACTTCACTTTCCTTGGCCGTTTCATATCCCACACTGGCTGCTGCTCCTCACATGTTTGTGAATGCCTACAAGAATGTCCTTGCCCTTGCTGTGGCAACGGAGTATTCATACCCTGAGGCTGATGAGGTTAAGGAGTATCTAAAGGATCCAAGTAAGTTTGCTGCTGTAGCTGCTGCTGCTCCTGCAGATATAACTTATGCTGAACCAGCTGCTGCTAAAGAGGAGAAGAAGGAGGAACCAGAAGAAGAGTCTGATGAAGACATTGGTTTTGGTCTTTTTGGTGATGATTAG 966 0.4607 MAPKPTKAEKKISYDAKLCQLLDEFSQILIVNADNVGSKQLQSIRSGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFNPEVLDLTDDDLVAKFAIGVSMVTSLSLAVSYPTLAAAPHMFVNAYKNVLALAVATEYSYPEADEVKEYLKDPSKFAAVAAAAPADITYAEPAAAKEEKKEEPEEESDEDIGFGLFGDD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02108 321 PIRSF L10E 1 319 IPR030670 GO:0042254
Vifa1g02108 321 Gene3D - 114 185 IPR043164 -
Vifa1g02108 321 CDD Ribosomal_P0_L10e 9 185 - -
Vifa1g02108 321 MobiDBLite consensus disorder prediction 304 321 - -
Vifa1g02108 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 303 - -
Vifa1g02108 321 MobiDBLite consensus disorder prediction 293 321 - -
Vifa1g02108 321 FunFam 60S acidic ribosomal protein P0 113 186 - -
Vifa1g02108 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Vifa1g02108 321 Pfam Ribosomal protein L10 8 108 IPR001790 -
Vifa1g02108 321 Gene3D - 6 209 IPR043141 -
Vifa1g02108 321 Pfam 60s Acidic ribosomal protein 234 318 - -
Vifa1g02108 321 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02108 Vifa-Chr1 336539979 336541823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02108 1 319 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 81.818 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02108 K02941 - gmx:100777482 523.472