Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02106 ATGGCCGCAAGATCAACCTTACCTCTGATCATCAAAATAGACCCATCATTCGTGAACTGGATTTTTTTCTCTCAAAATAACAACAACCATGCCTCTACTTCTACACCTCCCAATCCTTATATACATGATCATTACACCCCTCCTTCTCCCTTTGAGATGAAAGTAAACACAAGTTTGAATCTTCTTACCACAAACACAAGCAGTGATCAATCAGTGGTGGAACCTGACATACCAACTAGTTCAGAAGACACAAGAGCTAACCTTGAGCTGGTTAATCTTCAAGCTGAGCTTGAGAGAAAGAAGGTGGAGAATCACCAGCTGAGGAACATGTTTGATGAGGCTAAGATGAATTACAACACACTGAATACGCATTTCATGAGTTTGATGCAAAAGGGGAAGGTAGAGGATTGTAATGAAGAACAACTAGAAGAAGATAAACCAAATGGGAATGGTGGAGTTTTGGCTCCAAGACAATTTATTGATCTTGGATTTGCTAGTAATGACTCTCATGCTGTTGAAGAACCAAGAAGTCAAGATCAGTCAAAATCACTTGTGAACGACAACGAGGAAGGTTTCAAGGATGAAGAACTCGTGCTTGATCACGAGAAGAATGAATCTGATCGGGGAAAGGATCGAAATGATAGTCCTTCGGATCGAGTTATAGCTGGTAATAATAATGATGATGTTCCAAATTTTAGTCCTCAAAGTAGTGTTGAACAAGCTGAGGCAACCATGAGGAAGGCTAGGGTTTCTGTTCGAGCTCGATCGGAAGCTAATATGATCAATGATGGGTGTCAATGGAGAAAATATGGACAGAAGATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGCACCATGGCCATAGGTTGTCCAGTGAGAAAACAGGTACAAAGGTGTGCTGAAGACAGATCAATATTGGTAACAACATATGAAGGAAATCACAATCATGCATTGCCACCAGCCGCTATGGAAATGGTACACCAAACATCGTCGGCCGCAAAAATGTTACTCTCGGGACCGATGACAAGTCCTGACGGACTAATGAATCCAAATTTTCTGACAAGAACAATGTTTCCTTCATCTTCAAGCATTGCAACAATCTCAGCATCAGCTCCGTTTCCAACCATTACATTGGACTTAACTCAATCACCAAACAATCCATTACAGTTCCCTAACCCTAAACTCTCAAACCAGTTCCAATTTCCTTTCCCTCAGACATTGTTTAACCAGTCAAGATTTTCAGGACTTCAAACGTCTCAAGATATTGCGGAAAGTTCTACATCTCGACAGATATCGCAGAATCTTGTTGACAAAGTTACTGCTATTGCTAAAGATCCTAACTTCAGTGCAGCTTTGGCAGCTGCTCTAACTTCCATTATTGGGGCTGCATGGCCAAACAATGATAATAGCGCCGTTGATAATGGTAACAATACGACAGCCAATAACAGTAATAGAAATGTTACATCAAGTAACAATTCCAATGAAAGCAATGATACCAACAATCCCAGTTCTTCAGGAAACTAA 1533 0.409 MAARSTLPLIIKIDPSFVNWIFFSQNNNNHASTSTPPNPYIHDHYTPPSPFEMKVNTSLNLLTTNTSSDQSVVEPDIPTSSEDTRANLELVNLQAELERKKVENHQLRNMFDEAKMNYNTLNTHFMSLMQKGKVEDCNEEQLEEDKPNGNGGVLAPRQFIDLGFASNDSHAVEEPRSQDQSKSLVNDNEEGFKDEELVLDHEKNESDRGKDRNDSPSDRVIAGNNNDDVPNFSPQSSVEQAEATMRKARVSVRARSEANMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAIGCPVRKQVQRCAEDRSILVTTYEGNHNHALPPAAMEMVHQTSSAAKMLLSGPMTSPDGLMNPNFLTRTMFPSSSSIATISASAPFPTITLDLTQSPNNPLQFPNPKLSNQFQFPFPQTLFNQSRFSGLQTSQDIAESSTSRQISQNLVDKVTAIAKDPNFSAALAAALTSIIGAAWPNNDNSAVDNGNNTTANNSNRNVTSSNNSNESNDTNNPSSSGN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02106 510 SMART WRKY_cls 261 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g02106 510 SUPERFAMILY WRKY DNA-binding domain 254 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g02106 510 MobiDBLite consensus disorder prediction 186 217 - -
Vifa1g02106 510 FunFam probable WRKY transcription factor 31 246 323 - -
Vifa1g02106 510 Gene3D WRKY domain 246 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g02106 510 MobiDBLite consensus disorder prediction 218 242 - -
Vifa1g02106 510 MobiDBLite consensus disorder prediction 136 155 - -
Vifa1g02106 510 MobiDBLite consensus disorder prediction 169 245 - -
Vifa1g02106 510 Pfam WRKY DNA -binding domain 262 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g02106 510 ProSiteProfiles WRKY domain profile. 256 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g02106 510 Coils Coil 85 117 - -
Vifa1g02106 510 MobiDBLite consensus disorder prediction 474 510 - -
Vifa1g02106 510 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 71 483 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02106 Vifa-Chr1 336274805 336277533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02106 55 480 WRKY Transcription Factor Family AT1G62300 46.930 5.94e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g02106 WRKY 4.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02106 - - psat:127086719 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02106 1 336274805 336277533 Vifa1g09917 1 1620734217 1620736433 ECH
Vifa1g02106 1 336274805 336277533 Vifa1g02106 1 336274805 336277533 ECH