Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g02106 | ATGGCCGCAAGATCAACCTTACCTCTGATCATCAAAATAGACCCATCATTCGTGAACTGGATTTTTTTCTCTCAAAATAACAACAACCATGCCTCTACTTCTACACCTCCCAATCCTTATATACATGATCATTACACCCCTCCTTCTCCCTTTGAGATGAAAGTAAACACAAGTTTGAATCTTCTTACCACAAACACAAGCAGTGATCAATCAGTGGTGGAACCTGACATACCAACTAGTTCAGAAGACACAAGAGCTAACCTTGAGCTGGTTAATCTTCAAGCTGAGCTTGAGAGAAAGAAGGTGGAGAATCACCAGCTGAGGAACATGTTTGATGAGGCTAAGATGAATTACAACACACTGAATACGCATTTCATGAGTTTGATGCAAAAGGGGAAGGTAGAGGATTGTAATGAAGAACAACTAGAAGAAGATAAACCAAATGGGAATGGTGGAGTTTTGGCTCCAAGACAATTTATTGATCTTGGATTTGCTAGTAATGACTCTCATGCTGTTGAAGAACCAAGAAGTCAAGATCAGTCAAAATCACTTGTGAACGACAACGAGGAAGGTTTCAAGGATGAAGAACTCGTGCTTGATCACGAGAAGAATGAATCTGATCGGGGAAAGGATCGAAATGATAGTCCTTCGGATCGAGTTATAGCTGGTAATAATAATGATGATGTTCCAAATTTTAGTCCTCAAAGTAGTGTTGAACAAGCTGAGGCAACCATGAGGAAGGCTAGGGTTTCTGTTCGAGCTCGATCGGAAGCTAATATGATCAATGATGGGTGTCAATGGAGAAAATATGGACAGAAGATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGCACCATGGCCATAGGTTGTCCAGTGAGAAAACAGGTACAAAGGTGTGCTGAAGACAGATCAATATTGGTAACAACATATGAAGGAAATCACAATCATGCATTGCCACCAGCCGCTATGGAAATGGTACACCAAACATCGTCGGCCGCAAAAATGTTACTCTCGGGACCGATGACAAGTCCTGACGGACTAATGAATCCAAATTTTCTGACAAGAACAATGTTTCCTTCATCTTCAAGCATTGCAACAATCTCAGCATCAGCTCCGTTTCCAACCATTACATTGGACTTAACTCAATCACCAAACAATCCATTACAGTTCCCTAACCCTAAACTCTCAAACCAGTTCCAATTTCCTTTCCCTCAGACATTGTTTAACCAGTCAAGATTTTCAGGACTTCAAACGTCTCAAGATATTGCGGAAAGTTCTACATCTCGACAGATATCGCAGAATCTTGTTGACAAAGTTACTGCTATTGCTAAAGATCCTAACTTCAGTGCAGCTTTGGCAGCTGCTCTAACTTCCATTATTGGGGCTGCATGGCCAAACAATGATAATAGCGCCGTTGATAATGGTAACAATACGACAGCCAATAACAGTAATAGAAATGTTACATCAAGTAACAATTCCAATGAAAGCAATGATACCAACAATCCCAGTTCTTCAGGAAACTAA | 1533 | 0.409 | MAARSTLPLIIKIDPSFVNWIFFSQNNNNHASTSTPPNPYIHDHYTPPSPFEMKVNTSLNLLTTNTSSDQSVVEPDIPTSSEDTRANLELVNLQAELERKKVENHQLRNMFDEAKMNYNTLNTHFMSLMQKGKVEDCNEEQLEEDKPNGNGGVLAPRQFIDLGFASNDSHAVEEPRSQDQSKSLVNDNEEGFKDEELVLDHEKNESDRGKDRNDSPSDRVIAGNNNDDVPNFSPQSSVEQAEATMRKARVSVRARSEANMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAIGCPVRKQVQRCAEDRSILVTTYEGNHNHALPPAAMEMVHQTSSAAKMLLSGPMTSPDGLMNPNFLTRTMFPSSSSIATISASAPFPTITLDLTQSPNNPLQFPNPKLSNQFQFPFPQTLFNQSRFSGLQTSQDIAESSTSRQISQNLVDKVTAIAKDPNFSAALAAALTSIIGAAWPNNDNSAVDNGNNTTANNSNRNVTSSNNSNESNDTNNPSSSGN | 510 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g02106 | 510 | SMART | WRKY_cls | 261 | 321 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vifa1g02106 | 510 | SUPERFAMILY | WRKY DNA-binding domain | 254 | 322 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vifa1g02106 | 510 | MobiDBLite | consensus disorder prediction | 186 | 217 | - | - | |
Vifa1g02106 | 510 | FunFam | probable WRKY transcription factor 31 | 246 | 323 | - | - | |
Vifa1g02106 | 510 | Gene3D | WRKY domain | 246 | 323 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vifa1g02106 | 510 | MobiDBLite | consensus disorder prediction | 218 | 242 | - | - | |
Vifa1g02106 | 510 | MobiDBLite | consensus disorder prediction | 136 | 155 | - | - | |
Vifa1g02106 | 510 | MobiDBLite | consensus disorder prediction | 169 | 245 | - | - | |
Vifa1g02106 | 510 | Pfam | WRKY DNA -binding domain | 262 | 319 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vifa1g02106 | 510 | ProSiteProfiles | WRKY domain profile. | 256 | 322 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vifa1g02106 | 510 | Coils | Coil | 85 | 117 | - | - | |
Vifa1g02106 | 510 | MobiDBLite | consensus disorder prediction | 474 | 510 | - | - | |
Vifa1g02106 | 510 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 71 | 483 | IPR044810 | GO:0003700 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g02106 | Vifa-Chr1 | 336274805 | 336277533 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g02106 | 55 | 480 | WRKY Transcription Factor Family | AT1G62300 | 46.930 | 5.94e-110 | 336 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Vifa1g02106 | WRKY | 4.8e-24 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g02106 | - | - | psat:127086719 | 779.63 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g02106 | 1 | 336274805 | 336277533 | Vifa1g09917 | 1 | 1620734217 | 1620736433 | ECH | |
Vifa1g02106 | 1 | 336274805 | 336277533 | Vifa1g02106 | 1 | 336274805 | 336277533 | ECH |