Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02104 ATGGAGATGGAGTGGACTCGAGGCAACATCATCGGACAAGGCTCATCCGCCACCGTCTACCTCGCCATCTCTCCTTACTCTTCCGATGTCTCCGCTGTTAAATCAGCGGAGACATCGACATCAACATCGGTTTCAAACTCGAAACAACTCCTGAGAGAACAGAGAATTTTGTCTCCTTTGTCCTCTCCCTACATAGTTAGCTACAAAGGTTGCAATTTCACAAAGGAGAATCACAAGAATTGGTTCAACCTCTTCATGGAGTACATGCCATTCGGAAATCTCTCCGAGGAGACGCGACGAAAGGGCGGTCGGATTAACGAGCCGACGATAGCACACTACACAAGACAAATTGTGGAAGGACTTGAGTACTTACATTCAAAAGGTGTAGTGCATTGTGATATCAAAGGTAGTAACATATTGGTTGGTGAAAAAGGAGTCAAAATCGGAGACTTTGGATGTGCGAAAATGGTCGATGAAATCGGGCTGATCGCGGGAACTCCGATGTATATGTCGCCCGAAGCAGCGCGAGGCGAAGAACAAGGCTATCCTTGTGATGTTTGGTCGCTTGGTTGCACTGTTATTGAAATGGCAACTGGTTTTTCACCTTGGTCCAATGTAGAAGACCCTGTTAATGTTCTGTTTCGTGTCGCGTATTCCGATGAGGTTCCGATGATTCCTTGTTTTCTTTCGGAACAAGCAAAGGATTTCTTGAAAAAGTGTTTTGTAAGGGATGCTAAGGAGAGATGGAGTTGTAGTCAGTTGTTGAAGCATCCATTTCTTGAGAAAATTCAAGAGTTTGATTCGTGTTCGCCGACTAGTATTCTCGAACAAGGCTTTTGGAATTGCCAAGACGATTCCGAAAGTTTCGATTTTGATGATTTGGGTGAGATTGGTTTTGAGAATTGTCCGGTTGATAGGATCAAAAAGCTTGCTTTGTGTTCAAGGGATCCATGTTGGAAATTGGGTGATGAAAATTGGATTATAGCTAGAGGAAATGATGCAGGTGCAGAGTCTTCAATTAGTGATGTTAATGATAGAATTAGCAGTGATTATTTTTGTGAGGATTATACTAATTGTAAGATTAGTGATGTTAGTTACCTAGTTAATAGTTTTGATTTTGAGAGAGGAATTGGAAGGTTGATGATGCCAAATTCATCATTAGATTTCTTATAA 1173 0.4194 MEMEWTRGNIIGQGSSATVYLAISPYSSDVSAVKSAETSTSTSVSNSKQLLREQRILSPLSSPYIVSYKGCNFTKENHKNWFNLFMEYMPFGNLSEETRRKGGRINEPTIAHYTRQIVEGLEYLHSKGVVHCDIKGSNILVGEKGVKIGDFGCAKMVDEIGLIAGTPMYMSPEAARGEEQGYPCDVWSLGCTVIEMATGFSPWSNVEDPVNVLFRVAYSDEVPMIPCFLSEQAKDFLKKCFVRDAKERWSCSQLLKHPFLEKIQEFDSCSPTSILEQGFWNCQDDSESFDFDDLGEIGFENCPVDRIKKLALCSRDPCWKLGDENWIIARGNDAGAESSISDVNDRISSDYFCEDYTNCKISDVSYLVNSFDFERGIGRLMMPNSSLDFL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02104 390 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 285 - -
Vifa1g02104 390 ProSiteProfiles Protein kinase domain profile. 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02104 390 CDD STKc_MAPKKK 4 260 - -
Vifa1g02104 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vifa1g02104 390 Pfam Protein kinase domain 7 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02104 390 SMART serkin_6 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g02104 390 Gene3D Transferase(Phosphotransferase) domain 1 2 288 - -
Vifa1g02104 390 SUPERFAMILY Protein kinase-like (PK-like) 5 271 IPR011009 -
Vifa1g02104 390 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02104 Vifa-Chr1 335802694 335803866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02104 3 310 MAP Kinase Kinase Kinase AT2G32510 47.879 9.02e-104 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa1g02104 Pkinase 1.5e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02104 K20716 - gmx:100797801 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02104 1 335802694 335803866 Vifa1g09920 1 1621788000 1621789376 ECH
Vifa1g02104 1 335802694 335803866 Vifa1g02104 1 335802694 335803866 ECH
Vifa1g02104 1 335802694 335803866 Vifa4g05069 4 1587769113 1587770344 ECH