Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02102 ATGGCTTCACAACAACAATTCCGTAATGTAGACCCAACAATTTGGCTAGAATTTGCTGGAGATTCTTTCACAATTCCGAAACTCCATTCTAAAGTATATTATTTTCCAATAGGCCATTTAGAACAATGTCCTAAAACCCCTAGCACTCAAGCACCCTCCCTCTTCAGTCCATTCATTATTTGCACAGTCTCCTCTGTTGATCTCCTTGCAGATCCTGAAACTGATCAAATCTTTGCAAAACTACTCCTCACTCCCGTCATTGACGCAACTGTTGTTCCTCTCGAGGTTATCAATGAAGAAGACAATGGTGATCATGTTGTTTCCTGTGCCAAGACTCTAACTATTTCTGATGCTAACAATGGAGGTGCATTCTCTGTACCTAAGGCCTGCGCCAATTTAATCTTTCCGCAGCTTGACTTGACAACTTCATTGCCGTCTCAAGAACTCTCCGTCACAGATGTTTGCGGTGTTGTCTGGACCTTTTCTCACGTCTATCGCGGGAATCCCAAGCGACACTTATTCACCACTGGCTGGAGTGCATTTGTTGACAAGAAGCGACTCGTCGGTGGGGATACCCTTGTTTTCATTAAAAACTCAGCTGGAGAGATATTTGTTGGAATCCGCCGCAAAAATATGTTCGGTGCCCCTAATAAAAAAACCGACCAGGCGGTTATCAATGCAGTAGAATTGGCTGTGAAGAATACACCATTTGAAGTCTTGTGTTATCCAACTGTTCATGGTTTTGATTTTGTGGTGGGAGATAAAGTTTTTGAGGATGCAATGAAGATTGATTGGAAAACTGGAATGAGAGTTACTCACAAAGTGAAGGGATGCTCAACTTTTCATGGGACAATATCTGCAATCTCTCATTCTCATCCATGGCGCATGCTAGAGATTAAATGGGATGAACTCAACGTTTCGGAGAATCTAAAATATGTAAGTCCGTGGCAAATTGAACCTGATTTTGACATACCTCTACTGCATCAACTATTCCCTCCAACAAAACGGCTAAGAGCTTCTCAGGAGTTTGGCTTATTAAGTGATACAAAAAAAACTTCTTCAGTTTCAATGGTTTCATTGGAACCCTTGAACCAAACACTATTGAACTTTGATGGCATCCTGAGAGTCGGGTGA 1134 0.4189 MASQQQFRNVDPTIWLEFAGDSFTIPKLHSKVYYFPIGHLEQCPKTPSTQAPSLFSPFIICTVSSVDLLADPETDQIFAKLLLTPVIDATVVPLEVINEEDNGDHVVSCAKTLTISDANNGGAFSVPKACANLIFPQLDLTTSLPSQELSVTDVCGVVWTFSHVYRGNPKRHLFTTGWSAFVDKKRLVGGDTLVFIKNSAGEIFVGIRRKNMFGAPNKKTDQAVINAVELAVKNTPFEVLCYPTVHGFDFVVGDKVFEDAMKIDWKTGMRVTHKVKGCSTFHGTISAISHSHPWRMLEIKWDELNVSENLKYVSPWQIEPDFDIPLLHQLFPPTKRLRASQEFGLLSDTKKTSSVSMVSLEPLNQTLLNFDGILRVG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02102 377 Gene3D - 261 323 - -
Vifa1g02102 377 SUPERFAMILY DNA-binding pseudobarrel domain 107 212 IPR015300 -
Vifa1g02102 377 FunFam Auxin response factor 107 211 - -
Vifa1g02102 377 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 344 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g02102 377 Pfam B3 DNA binding domain 110 211 IPR003340 GO:0003677
Vifa1g02102 377 SMART B3_2 109 211 IPR003340 GO:0003677
Vifa1g02102 377 Gene3D - 107 211 IPR015300 -
Vifa1g02102 377 ProSiteProfiles B3 DNA-binding domain profile. 109 211 IPR003340 GO:0003677
Vifa1g02102 377 CDD B3_DNA 111 209 IPR003340 GO:0003677
Vifa1g02102 377 Pfam Auxin response factor 227 303 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02102 Vifa-Chr1 335113309 335114602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02102 8 344 B3 DNA Binding Superfamily AT1G77850 40.153 2.15e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa1g02102 B3 2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02102 - - psat:127121973 571.622