Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02099 ATGGTTCATCAAGAACAATTCCGCAATGTTGATCCAAGAATATGGCAAGAATGTGCAGGAAGTTCTTTCACAGTTCCGAAACTTCATTCTAAAGTATATTATTTTCCTATTGGTCATTTAGAACACTCTCGTATAACCCCTAACACTCAAACACTCTCCCTCCTCACTCATGGCGGCCCATTCATTATTTGCACAGTCTCTTCTGTTGATTTTCTTGCAGATCTTGAAACTGATCAAATCTTTGCAAAACTACTCCTCACTCCTGTGACTGACGGAAGTGCTGTTGTTCCTCTCGAGGTTATCAACGAAGAAGACAATGGTGATCACGTTGTTTCCTATGCCAAGACTATATCTAACTCTGATGCTAACAATGGAGGTGGATTCTCTGTACCTAAGGCCTGCGCCAACTCAATCTTTCCGCCACTTGACTTGACAACTCCATTGCCGTCTCAAGAACTCTCCATCACCGATGTTTGTGGTGTTTCCTGGACCATTCGCCACGTCTCTCGCGGAAATCCCAAGCGATACCTATTCTCCACCGGCTGGAGTGCATTTGTTGACAAGAAGCAACTCGTCGGTGGTGATACCCTTGTTTTCATTAAAAACTCGGCTGAAAAGATATTTGTTGGAATCCGCCGGAAGAATATGGTTGCTGCCGCTAGGAAAATAACCGAAAAGACAGTTATCAACGCAGTAGAATTGGCTGAGAAGAATACACCATTTGAAGTCTTGTGTTATCCCACGGTTGATGGTTTTGATTTTGTGGTGGAAGATAAAGTTGTGAAGGATGCAATGAACATTCATTGGTGTCGTGGAATGAGAGTTATGCACACAGTGAAGAATGATGATTCTTCAAAGAGATGCACATTTTTGCATGGGACAATATCTGCAATCTCCCATTCTTCAACTCATCCATGGCGCATGCTACACGTTGAATGGAATGATCCGAAAGTCTCGAAGAATCTAAGGCATGTAAGTCCGTGGCAGGTTGAACCTGTTTTTAGCATACCTATACTACATCAACAGTTTCCCCTAACAAAAAGGATAAGAGCTGCTCAAGGATCTGCAATATTAAGTGATACAGAAGGAGTTTCTTCTATTCCAATGGAACCCTTGAATCAGACACTACTGAATTTTGAACTCCTCAAGAACAAAGTGAACTGGTATTCACAACTGCAGCACCAAAATAGTTAA 1194 0.4213 MVHQEQFRNVDPRIWQECAGSSFTVPKLHSKVYYFPIGHLEHSRITPNTQTLSLLTHGGPFIICTVSSVDFLADLETDQIFAKLLLTPVTDGSAVVPLEVINEEDNGDHVVSYAKTISNSDANNGGGFSVPKACANSIFPPLDLTTPLPSQELSITDVCGVSWTIRHVSRGNPKRYLFSTGWSAFVDKKQLVGGDTLVFIKNSAEKIFVGIRRKNMVAAARKITEKTVINAVELAEKNTPFEVLCYPTVDGFDFVVEDKVVKDAMNIHWCRGMRVMHTVKNDDSSKRCTFLHGTISAISHSSTHPWRMLHVEWNDPKVSKNLRHVSPWQVEPVFSIPILHQQFPLTKRIRAAQGSAILSDTEGVSSIPMEPLNQTLLNFELLKNKVNWYSQLQHQNS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02099 397 Pfam Auxin response factor 231 307 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa1g02099 397 SUPERFAMILY DNA-binding pseudobarrel domain 110 216 IPR015300 -
Vifa1g02099 397 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Vifa1g02099 397 Gene3D - 269 337 - -
Vifa1g02099 397 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 365 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa1g02099 397 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
Vifa1g02099 397 CDD B3_DNA 112 213 IPR003340 GO:0003677
Vifa1g02099 397 Gene3D - 110 215 IPR015300 -
Vifa1g02099 397 SMART B3_2 113 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02099 Vifa-Chr1 334815093 334816456 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02099 8 363 B3 DNA Binding Superfamily AT1G77850 35.644 3.53e-86 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa1g02099 B3 2.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02099 - - psat:127121973 552.362