Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02092 ATGGAAGATAATAGTATCAATATGTCAGGCTTTTGCATGAGATCATCTGGAAGTAGTAGCAGTGGCACAAAGTGTGGACGTTGGAATCCAACGACAGAACAAGTTAAACATCTGACTCAACTTTTTAGAGCAGGGCTCAGAACTCCAAGCACTGATCAAATTCAAAAGATATCCAATCAACTCAGTTTTTATGGTAAGATAGAGAGCAAGAACGTGTTCTATTGGTTTCAAAATCATAAGGCTAGGGAAAGACAAAAGCGTAGAAAGGTTTCTTTTGATGATGACAAGGATGTTATTGTTCATCGTAGAGACAACTCCGTCCATGCTTCTACACAAAATCTTGTTGAGATGTACTCGGAGCCTAATAGGGTGATTGAGACTCTTGAGCTTTTTCCATTGAACTCTTTTGGTGAATCAGAATCAGAATCTGAGAAGCTGAGTATGCATGTAAATGAAAGTAGGGAAAATCCAATATTTGCATACACATGTACAATGGGTGAACAAATGGAGCATCCACCATTAGACTTACGGTTGAGCTTTGTGTAA 546 0.3864 MEDNSINMSGFCMRSSGSSSSGTKCGRWNPTTEQVKHLTQLFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDDKDVIVHRRDNSVHASTQNLVEMYSEPNRVIETLELFPLNSFGESESESEKLSMHVNESRENPIFAYTCTMGEQMEHPPLDLRLSFV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02092 181 ProSiteProfiles 'Homeobox' domain profile. 21 86 IPR001356 GO:0003677
Vifa1g02092 181 Gene3D - 24 92 - -
Vifa1g02092 181 FunFam WUSCHEL-related homeobox 11 24 92 - -
Vifa1g02092 181 CDD homeodomain 27 87 IPR001356 GO:0003677
Vifa1g02092 181 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 15 106 IPR044555 GO:0003700|GO:0099402
Vifa1g02092 181 MobiDBLite consensus disorder prediction 1 27 - -
Vifa1g02092 181 SUPERFAMILY Homeodomain-like 16 89 IPR009057 -
Vifa1g02092 181 Pfam Homeodomain 25 85 IPR001356 GO:0003677
Vifa1g02092 181 SMART HOX_1 23 90 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02092 Vifa-Chr1 333262180 333262831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02092 5 181 Wox Gene Family AT3G11260 54.595 4.75e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa1g02092 Homeodomain 7.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02092 - - cam:101494967 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02092 1 333262180 333262831 Vifa1g02092 1 333262180 333262831 ECH