Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02091 ATGGATGTGATAAAAACGCAACAAATTTCATGGAGAGCCATAGAAAAAGTCGTAGTTCACCCTCTCGTCTTGCTCAGCATAGTCGATAACTACAACAGAGTCGCCAAAGACACTCGCAAACGCGTCGTCGGCGTCTTGCTCGGTTCCTCTTTCAAAGGCACCGTTGATATCACCAACAGCTACGCCGTGCCTTTTGAAGAAGATGAAAAGGATCCTAGCATTTGGTTTCTCGATCATAATTATCATGAATCAATGTTCTCCATGTTTAAGAGAATCAATGCTAAGGAGCATGTTGTAGGGTGGTATAGTACTGGACCGAAGTTGAAAGAAAATGACCTTGACATTCATGGTTTATTCAATGACTATGTTCCAAATCCTGTTTTGGTTATAATTGATGTCGAACCTAAGGAGCTGGGAATTCCTACTAAAGCTTACTATGCTGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCAATCAGAAATTGCTGCTCATGAAGTTGAAGAGATAGGAGTTGAGCACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCCTTGAAGGGTTTGGATGCCAGACTCAAAGAGATAAGAAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCCTTAAACCATGAGATCCTGTACCATTTGCAGGACGTATTCAACCTGCTGCCAAATCTTAATGTCACTGATTTGATCAAGGCTTTTGCAGTGAAAACAAATGATATGATGCTAGTAATATACCTGTCGTCTCTCATCAGAAGTGTAATTGCACTCCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGAAGAAGACTCAAAGTCAGAGCCTGTACCAAGTACAGCAGGAAGTTGA 933 0.4137 MDVIKTQQISWRAIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDITNSYAVPFEEDEKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLKENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVTDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEREEDSKSEPVPSTAGS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02091 310 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Vifa1g02091 310 Gene3D Cytidine Deaminase, domain 2 10 194 - -
Vifa1g02091 310 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa1g02091 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vifa1g02091 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 15 291 - -
Vifa1g02091 310 FunFam 26S proteasome non-ATPase regulatory subunit 7 9 194 - -
Vifa1g02091 310 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Vifa1g02091 310 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Vifa1g02091 310 MobiDBLite consensus disorder prediction 291 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02091 Vifa-Chr1 333239090 333242214 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02091 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.487 4.37e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02091 K03038 - gmx:100790393 583.178