Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02084 ATGCCTTCTTCTTCCCCTACATTGCTCTCAAAATGTACCATTTTCCCAGACCAAAAATCAACTATTGCCAACCTTAAACTCTCTGTTTCAGACCTACCTATGCTTTCTTGTCACTACATCCAAAAAGGTTGTCTCTTCACCAAACCTTCCATTCCCTTTCATAACTTAATCCCTCTCCTCAAAACCGCTCTCTCTCAAACTCTCTCTATCTTCCCACCTCTCGCCGGTCGTTTCACCACCGACCCCGACGGTTACGTCTACTTAACCTGCAACGACGCCGGTGTCGATTTCATTCACGCCATTGCAATTGATCTCTCCATCAGTGATCTCCTCTCAACCACAGACGTACATGACTCCTTCAAAGAGTTTTTCACTTTCGATCGAAAAGTCAGTTTCACCGGTCATTTCTCTCCGATCATGGCCGTTCAGGTGACTGAACTCGCTGATGGCTTTTTTATAGGCTGTTCCGTTAATCACGCTGTCACTGACGGAACTTCCTTCTGGAATTTCTTCAACACGTTTGCTCAAGTCTGTAGAGGAGCAAACAAATGCCTCCGTAACCCTCCAAGCTTCCGCCGCGACTCTGTTTTAATCTCCGACGCCGTTCTTCGATTATCCGAAGAAGGTCCTGCAGTTACCTTCAATGCCGACGCGCCCATTCGAGAAAGAATCTTTAGCTTCAGCCGTGAAGCAATTCAGAAACTGAAAGCCAGAGCTAATAACAAACGGTGGCCGGAAACTAACACTTCCGTTGAATTGATGCAGAAACAAATAAACGATAGTTATAACAATAACAACCAGAAAGAAAAAGAAAAAGAAAATGGAAAAGTAGCGACGTTAATTGAAAACTGGTTCAAAACTATTGTTAATCCAAAGCAGCAAACAGTAACAGAAACCGAAACGGTTGAGATTTCGTCGTTCCAATCCGTATGCGCGTTGCTATGGCGTGCGGTCACGCGCGCGAGGAAAGTTCCAGCTACAAAAACGACGACGTTTAGAATGGCGGTTAATTGTCGTCATAGAATAGAACCAAAGCTAGAAGCGTTTTATTTCGGAAACGCGATTCAGAGCGTTCCAACATACGCTTCAGCGGGTGATGTTTTGAGTAAAGATTTACGGTGGTGTGCGGAGCAGCTGAACAAAAACGTGAAGGCGCATGATAGTGTTATGGTGAGGAAGTACATAGAGGATTGGGAGAATAATCCTAGGTGTTTTCCTTTGGGGAACCCTGATGGTAGTTCTATAACCATGGGCAGTTCTCCGAGGTTTCCGATGTATGATAATGATTTTGGTTGGGGGAAGCCGTTGGCGGTTAGGAGTGGGAAGGCGAATAAATTCGACGGGAAGATTTCGGCGTTTCCGGGGAGAGATGGAAGTGGGACGGTGGATTTGGAGGTGGTTTTGGCGCCAGAAACTATGGCGGGGCTTGAGACTGATGCGGAGTTTATGGCTTATGCGACGAGGCAATTGTGA 1473 0.4596 MPSSSPTLLSKCTIFPDQKSTIANLKLSVSDLPMLSCHYIQKGCLFTKPSIPFHNLIPLLKTALSQTLSIFPPLAGRFTTDPDGYVYLTCNDAGVDFIHAIAIDLSISDLLSTTDVHDSFKEFFTFDRKVSFTGHFSPIMAVQVTELADGFFIGCSVNHAVTDGTSFWNFFNTFAQVCRGANKCLRNPPSFRRDSVLISDAVLRLSEEGPAVTFNADAPIRERIFSFSREAIQKLKARANNKRWPETNTSVELMQKQINDSYNNNNQKEKEKENGKVATLIENWFKTIVNPKQQTVTETETVEISSFQSVCALLWRAVTRARKVPATKTTTFRMAVNCRHRIEPKLEAFYFGNAIQSVPTYASAGDVLSKDLRWCAEQLNKNVKAHDSVMVRKYIEDWENNPRCFPLGNPDGSSITMGSSPRFPMYDNDFGWGKPLAVRSGKANKFDGKISAFPGRDGSGTVDLEVVLAPETMAGLETDAEFMAYATRQL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02084 490 Coils Coil 251 271 - -
Vifa1g02084 490 Gene3D - 219 482 IPR023213 -
Vifa1g02084 490 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 483 - -
Vifa1g02084 490 Gene3D - 7 205 IPR023213 -
Vifa1g02084 490 Pfam Transferase family 7 483 - -
Vifa1g02084 490 SUPERFAMILY CoA-dependent acyltransferases 37 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02084 Vifa-Chr1 331981148 331982620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02084 16 477 Monolignol Biosynthesis Gene Families AT5G48930 25.793 1.04e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02084 - - gmx:100779616 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02084 1 331981148 331982620 Vifa1g02084 1 331981148 331982620 ECH