Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02080 ATGGCGAATTCAATTCACAAAGTTAGTGGCATCGGGAGCAGCTCTATGGTTCGAAAACTTGAAACAGATGAAATTGATGCTGAAATGTATATTCAGCCTGGAAATCCCTATTTTTTTGCGAAATACTATCATTACAGACCCAATGAATTGCATATACCAAAAAAAGTTATTAAGGATTTCTGCCTCTGCTTCACAAAACATGTCAACCTTATATGTTGCAACTGCAAGGATATAGAGAGCAATGAAATAGCATCTTATCATGAGAAGTTGCCCGAAATGACCACAAAACATAGCAAAAAGAGAGGAGAAATACGTACATGGAAAAATGGACGAGTGTTTGTGCTGGGGTGGGAAAATTTTTGGGCCAAGTACAAGATTAAAGAAAGTGATAGCTGCTTGTGTGAAATTGTGTTGCATCAAGAGAAAGCAATAGAAATGATAAGGGTGCACCTTGTTAGGAAGGTTAGGAATGAATGA 477 0.3753 MANSIHKVSGIGSSSMVRKLETDEIDAEMYIQPGNPYFFAKYYHYRPNELHIPKKVIKDFCLCFTKHVNLICCNCKDIESNEIASYHEKLPEMTTKHSKKRGEIRTWKNGRVFVLGWENFWAKYKIKESDSCLCEIVLHQEKAIEMIRVHLVRKVRNE 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02080 158 Gene3D - 18 156 IPR015300 -
Vifa1g02080 158 SUPERFAMILY DNA-binding pseudobarrel domain 31 137 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02080 Vifa-Chr1 330661781 330663078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02080 3 153 B3 DNA Binding Superfamily AT5G57720 28.205 1.83e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02080 - - mtr:120578114 225.713