Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02069 ATGGATTTTGAAACCCTTTATTCTCCTTATTTTATGATGGATCCAAATTGGTTTGTTGAAGAGAGTCATAACACAGAATGGAGTAGAGAAGATAACAAGAAGTTTGAAAGTGCTCTTGCTATATATGATAAGGATACACCTGATAGATGGTTCAAGATTGCTGAGATGATTTCTGGTAAGACTGTTTTTGATGTGATTAAACAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATCGAAGCTGGTAATGTTCCGATTCCGGGTTATCTTGCTTCTGCTTTCACTTTTGAAGTTGTTGAAAATCAGAACTATGATGCAAATAGAAGAAGACTTGGAACTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAAGAACATAGACGTTTTCTAATGGGACTTCTAAAGTACGGAAAAGGCGATTGGAGAAACATCTCTCGCAATTTCGTGGTGACAAAGACTCCGACGCAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTTCCGGCGGTAAAGATAAAAGAAGACCAAGCATTCATGACATAACAACTCTTAGTCTCACAGAAACTTCATCTGCATCAGATAAGAACAAGCAGAAAATGGGCTGGAGTAGTAGTAGTCACTACAATGATGGGTCACTTCAAGGGCAAGATCTCTATGACTGCTCTTTTCATGAATCTTATGCTAAGATGAAAATTCCCGGTTTCGCCACGGCTTCTAGAGACTTCAACAAAGAAGCTGTTTTTGGTATTCATGCACTTTAA 792 0.3864 MDFETLYSPYFMMDPNWFVEESHNTEWSREDNKKFESALAIYDKDTPDRWFKIAEMISGKTVFDVIKQYRELEEDVSEIEAGNVPIPGYLASAFTFEVVENQNYDANRRRLGTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTLSLTETSSASDKNKQKMGWSSSSHYNDGSLQGQDLYDCSFHESYAKMKIPGFATASRDFNKEAVFGIHAL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02069 263 CDD SANT 26 72 IPR001005 -
Vifa1g02069 263 Gene3D - 19 86 - -
Vifa1g02069 263 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Vifa1g02069 263 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Vifa1g02069 263 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Vifa1g02069 263 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Vifa1g02069 263 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Vifa1g02069 263 Gene3D - 125 176 - -
Vifa1g02069 263 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Vifa1g02069 263 CDD SANT 126 170 IPR001005 -
Vifa1g02069 263 FunFam transcription factor MYB1R1 125 176 - -
Vifa1g02069 263 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 224 IPR043363 -
Vifa1g02069 263 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Vifa1g02069 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Vifa1g02069 263 SMART sant 123 173 IPR001005 -
Vifa1g02069 263 SMART sant 23 75 IPR001005 -
Vifa1g02069 263 FunFam Transcription factor SRM1 19 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02069 Vifa-Chr1 329054613 329055992 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g02069 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02069 - - cam:101492144 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01221 5 354508654 354510075 Vifa1g02069 1 329054613 329055992 ECH
Vifa1g02069 1 329054613 329055992 Vifa1g02069 1 329054613 329055992 ECH