Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02062 ATGAAGCATTTTATGGTTTTACACCTTGTGATTTGGATTCATGTAATCCTCCTTTTTGGTATTGCTGGTAGTGAAAGGCCTGAAAGTGTGAAAATTGGAGCAGTTTTCACCTTCGATTCTGTGATAGGTAGAGTTGCAAAGGCAGCTATGGAAATGGCTGTTTCTGATATCAATTCTGACCCAACAGTTCTTAATGGAACGGAGCTTAACTTGATCATGAAGGATGGTATGTGTAATGCTTTTCTGGGATCAACTGGAGCTTTTCAAGTACTTGAGCAAGGGGTTATAGCCATAATTGGTCCACAATCATCTGCTATGGCTCATTCGATTTCTCAAATAGCGGATGCTGTTCATGTTCCCCTTATTTCATATGCTGCAACTGATCCAACCCTATCATCCCTTCAGTTTCCTCTCTTTTTCCGCACCGTACAAAGTGACTCAGAACAAATGTCTGCAATGGCCGATCTGATCGACTTTAACGGATGGAAAGAGGTCATTGTTGTATACTTGGATGATGATTACGGAAGAAATGGAATATCTTCTTTGAGCGACGAACTTGAAAACAGGAGATTGAAAATAGCTCACAAACTAGCTTTGAGTATTCAGTTCGATCTGAATGAAATCACTAAATTGCTCAATCAATCCAAAGTATTTAGCCCCCGCATTTTTGTTGTTCATGTCAACCCTGATCCGAGATTGAGAATCTTTTCCATCGCTCGCAAACTTCAAATGATGACTAGTGACTATGTATGGCTTGTCACAGATTGGCTTGCTGCTACCCTACATTCATTTCTGCCATCGAATCAGAATGCTCTTAGCATTGTCGAAGGAGTTGTCGGTCTTCGTCAACATATTCCAGATTCTAGTAAAAGAAGAGATTATATTTCTCGGTGGAAAAAAATGCAAAAGGAAGGTATAGCAAATACTAGCTTGAACTCTTATGGATTCCTCGCTTACGATACAATTTGGACAGTTGCGCATTCAATTGATAAATTTTTGAAAGTATATAAAAATATTACATTCTCGCTTCATGACAACAATATGGTAGCTCATACCGAAGGAATCGGTATTCAGCTTGAGAAGCTCAAAGTTTTTGCTGGTGGATCTGATTTTGTTGAAATATTATTAAAGTCAAATTTTAGCGGCGTAAGTGGTCAAATTCGGTTTAATTCAGACAGAAATATCATAAGTAGTGGTTATGATGTCATCAATATCAATCAGATGAAAATTAATAAGGTTGGTTACTGGTCTAATCATTCAGGATTTTCTGTTGTTCCTCCCGAAGTTCTTGCGAAAAAGAAACATCGCAGGGTTTCCGTAGATCAGAAGCTTGGCAATATAACTTGGCCAGGTGGGAAAACAGAACGACCGCGCGGCTGGGTGATTGCTGATAATGCTAAGCCATTGAGAATTGGAGTGCCGAAGAGAGCGAGTTTTGTTGAATTTGTAACTGAACTGCAAGATAGTCATCACATTCAAGGGTATTGTATCGATATCTTCATGAAGGCCTTGGAGTTTATTCCCTATGAAATTCCTTTTGTTTTCAAGCCGGTTGGAAATGGTAAATCAAATCCAAATTATGACGCACTTGTGAAAAAAATCGATGAAAATGTATATGATGCGGTTGTTGGAGACATAGCGATTGTGACGAACCGCACGAAGATCGCGGACTTTTCTCAGCCTTTTGCATCATCTAGTCTTGTTGTAGTGGCTCCTATCAACAGTTCAAAATCAAATGCTTGGGTATTCCTCAAACCGTTCTCAGCCGATATGTGGTGTATCATTATTGCATCGTTTTTCATGATTGGAGTGGTTATATGGATTCTTGAACACCGAGTCAACGACGAGTTCCGTGGTCCTCCTAAGAGACAAATTGTAACAATGTTTATGTTCAGCCTCTCAACATTGTTTAAGACAAATAATAATACCGTAAGCTCACTTTCGAAAATGGTGTTGATAGTCTGGCTTTTCCTACTGATGGTCATCACAGCTAGCTATACAGCAAGTTTGACTTCAATTCTCACAGTGGAACAGCTTTCGTCGCCGATCACAGGAATCGATAGTTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCATTTGCTTATAGCTATCTGACAGATAATCTTTATGTATCAAGTTCAAGACTTGTTTCCTTAGGCTCCCCTGAGGAATACGCCGTAGCACTTCGGAACGGGCCATCCGGTGGTGGCGTAGCAGCTATCGTCGACGAGCTTCCCTACGTTGAGTTGTTTCTGTCAAAAGAAACTGAATTCGGTATCATCGGTCAGCCGTTTACCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGACTCTCCTCTTGCACTTGACATGTCAACCGCAATTCTAAAACTAGCCGAAAGTGGAGAGCTTCAAAACATACACGAGAAATGGTTTTGCAAGATGGGTTGTCCCGGTGAACGGAAAAGCGACCTTAAACCCGACCAACTTCACTTGATCAGCTTCTGGGGTCTATATCTCTCATGCAGTGTCATCTCTGTCATCGCGCTCGTTCTGTTTATGCTGCGAATGATTAGCCAATATGTTGGATTCAAACAAAGACAGAAGGATGTTGCTGCATCATCGTTGGAACCGTCGGACAGTCGTTGTTCCCGGGTTGTCGTTAACTTCTTTAACTTCATTGATAAAAAGGAAGATGCTATCAAGAAAATGTTCACTCAAAGTGACAATCCTCATAACCCCAACTCAGAATTATGA 2745 0.4069 MKHFMVLHLVIWIHVILLFGIAGSERPESVKIGAVFTFDSVIGRVAKAAMEMAVSDINSDPTVLNGTELNLIMKDGMCNAFLGSTGAFQVLEQGVIAIIGPQSSAMAHSISQIADAVHVPLISYAATDPTLSSLQFPLFFRTVQSDSEQMSAMADLIDFNGWKEVIVVYLDDDYGRNGISSLSDELENRRLKIAHKLALSIQFDLNEITKLLNQSKVFSPRIFVVHVNPDPRLRIFSIARKLQMMTSDYVWLVTDWLAATLHSFLPSNQNALSIVEGVVGLRQHIPDSSKRRDYISRWKKMQKEGIANTSLNSYGFLAYDTIWTVAHSIDKFLKVYKNITFSLHDNNMVAHTEGIGIQLEKLKVFAGGSDFVEILLKSNFSGVSGQIRFNSDRNIISSGYDVININQMKINKVGYWSNHSGFSVVPPEVLAKKKHRRVSVDQKLGNITWPGGKTERPRGWVIADNAKPLRIGVPKRASFVEFVTELQDSHHIQGYCIDIFMKALEFIPYEIPFVFKPVGNGKSNPNYDALVKKIDENVYDAVVGDIAIVTNRTKIADFSQPFASSSLVVVAPINSSKSNAWVFLKPFSADMWCIIIASFFMIGVVIWILEHRVNDEFRGPPKRQIVTMFMFSLSTLFKTNNNTVSSLSKMVLIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVSSSRLVSLGSPEEYAVALRNGPSGGGVAAIVDELPYVELFLSKETEFGIIGQPFTRSSWGFAFQRDSPLALDMSTAILKLAESGELQNIHEKWFCKMGCPGERKSDLKPDQLHLISFWGLYLSCSVISVIALVLFMLRMISQYVGFKQRQKDVAASSLEPSDSRCSRVVVNFFNFIDKKEDAIKKMFTQSDNPHNPNSEL 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02062 914 Gene3D - 48 397 - -
Vifa1g02062 914 Pfam Bacterial extracellular solute-binding proteins, family 3 485 808 IPR001638 -
Vifa1g02062 914 Gene3D - 464 579 - -
Vifa1g02062 914 SUPERFAMILY Periplasmic binding protein-like II 447 808 - -
Vifa1g02062 914 SMART GluR_14 468 810 IPR001320 GO:0015276|GO:0016020
Vifa1g02062 914 FunFam Glutamate receptor 464 580 - -
Vifa1g02062 914 Pfam Ligand-gated ion channel 809 837 IPR001320 GO:0015276|GO:0016020
Vifa1g02062 914 CDD PBP1_GABAb_receptor_plant 31 426 IPR044440 -
Vifa1g02062 914 FunFam Glutamate receptor 145 306 - -
Vifa1g02062 914 CDD GluR_Plant 467 808 - -
Vifa1g02062 914 Gene3D - 145 422 - -
Vifa1g02062 914 Gene3D - 580 708 - -
Vifa1g02062 914 PIRSF IGluLR_plant 1 913 IPR017103 -
Vifa1g02062 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Vifa1g02062 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Vifa1g02062 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Vifa1g02062 914 FunFam Glutamate receptor 580 717 - -
Vifa1g02062 914 Pfam Receptor family ligand binding region 47 406 IPR001828 -
Vifa1g02062 914 Gene3D - 757 815 - -
Vifa1g02062 914 SUPERFAMILY Periplasmic binding protein-like I 25 461 IPR028082 -
Vifa1g02062 914 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 857 IPR015683 -
Vifa1g02062 914 FunFam Glutamate receptor 705 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02062 Vifa-Chr1 328474980 328479152 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02062 15 914 Ion Channels AT2G32400 54.415 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02062 K05387 - gmx:100796389 1436.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02062 1 328474980 328479152 Vifa1g02062 1 328474980 328479152 ECH