Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02057 ATGGAGGTGTTATTGTTAGGGTTAAAGGGTTGTTTTTTCCTCTTGATTTTGTGTTTGTGGATTCCAAAGGAAGTTATGGGAAGTACCATTGGAAACTCTAGTGTTTCTTCTAGACCTAAAGTACTGAAAATTGGAGCATTGTTTACTGTTGATTCTGTGATTGGGAAATCAGCTAAAGCAGGTATCATGCTTGCAATTGAAGACGTTAATGCTAATAGTACCGTTCTTTCGGGTTTTGATCTCGAAGTTATTTACAAGGATACAAATTGCAGTGGATTTCTTGGAACAGTAGAAGCTTTGCAGTTGATGGAGAATGAAGTGTTTGCGGCGATTGGTCCACAATCTTCAGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTTCATGTACCGCTTCTTTCGTTCGGAGCGACGGACCCGACTTTGTCCTCTCTGCAGTATCCGTATTTTGTCCGAACCACGCATAGTGACTATTTTCAGATGTATGCGATTGCGGACCTTGTTGATTTTTATAGATGGAGGCAAGTGATTGCCATTTTTGTAGATGATGATAATGGGAGAAACGGCGTTGCAGTACTCGGAGACGCGTTGGCGAAGAAACGCGGGAAGATATCTTACAAAGCCGCGTTATCTCCGGGAGCCAGCGAGAGTAATATTAGTGACTTGTTGAATGGTGTAAATTTGATGGAATCAAGAGTCTTTGTTCTTCATGTTAACCCTGATACTGGTTTGGGTATTTTTAATGTTGCCAAGAGTCTTGGAATGATGAAAAGTGGTTATGTTTGGATTGCAACGGATTGGCTTCCTTCGAAATTGGATTCGATGGAAACGGTTGATACCGATACATTGAAACTCCTTCAAGGTGTTGTGGCTTTGAGGCATCACACTCCTGATACTAATCTCAAAAAGAGTTTTTTCTCGAGGTTGAAGAACACGAAAGGCATGGAAACTGCGAGGTTCAACTCTTATTCTTTATATGCATATGATTCTGTTTGGTTAGCAGCTTATGCTCTTGATGCATTTCTCAAACAAGGTGGTAACATATCTTTCTCATCTGACCCTAAGTTGGTTGACACTAATGGAAGTATGTTGCATTTGTCTTCGCTTCGTGTTTTCGACGGCGGTCCTTCGTTTCTCCCTACACTTTTGAGAATGAACTTCACCGGATTGAGTGGTCAGATTCAATTTGATTCGGAAAATAATCTAATTCAACCATCATATGATATCCTTAACATCGGAGAATCAGGTTCGCGGGTAGGTTATTGGTCTAATTACTCCGGTCTATCAGTTTTAACTCCGGAAATTTTGTACACGAGACCGCCTAATACTTCATCAAGCAATCAAAAACTGTTCAATGTTTTGTGGCCTGGAGAAACTATAGCTACCCCGAAAGGATGGGTTTTCCCCAACAATGGAGAGCCACTGAAAATAGCAGTGCCTCATAGAATAAGCTACTTGGGTTTTGTTTCTAAAGATAAGAATCCACCGGGAGTTAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCGTATCCTGTTCCGCGAAAGTATATATTATATGGAGATGGTAATCGAAATCCCGACTATAGCCAGCTTGTCAATGAGGTTGCACTAAATACCTATGATGCAGCTGTTGGAGATGTTACAATTGTCCCAAACAGGACTAGGATTTTGGATTTCACTCAACCATTCATGGAATCAGGTCTGGTAGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGCCCTTGGGCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACCGGCGCCTTTTTCCTTTTTGTCGGAGCTGTTGTATGGATTCTTGAGCACAGGCACAATCCAGAGTTCCGAGGTCCACCCAAGAAACAAATCATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTTGGGAGGTTCGTGCTAATCATATGGCTTTTCGTGGTTCTAATTATCAATTCAAGCTACACTGCAAGCTTAACATCGATTCTCACAGTGCAACAACTGTCGTCACAAATTGAAGGAATTGAAAGCTTGATATCAGGTACTCAACCGATTGGAATTCAAGACGGATCGTTTGCACGGAGGTATCTGATAGATGAACTCAATATTCAACCATCTAGGATAATCTCCTTGAAAGATCCAAAAGCGTATGTTGATGCCCTTACGCGTGGACCAAAAGCAGGAGGGGTTATGGCTATTGTAGACGAGCTTCCATATATTGAACTCTTTATGTCTAGTACCGACTGCAAATTCAGAACGGTTGGACAGGAGTTCACTAAAAGTGGTTGGGGATTCGGATTCCAAAGGGACTCTCCCCTTGCTGTTGATATGTCAACTGCCATTCTTCAACTCTCGGAGAACGGTGACTTGCAAAAGATTCACGACAAATGGATATCAAGACATGATTGTGCTGCAAAAGTCAACGACGACGTTGATTCAAACGAACTATCACTTAGTAGCTTCTGGGGGCTCTTTCTTATATGCGGCATTGCATGTTTTCTTTCTTTGATCGCATTCTTTGTTAGAGTGTTCTGTCAATACATGAAATTCATCCCAGTGGACGAAGAAGTTGACCAGGAAAATCCATCTGACAGGCCTAGAAGAACTTTTCGATCTTCGAGAAGCTTCAAAGACTTGATTGGATTTGTGGATAAGAGAGAAAAAGAAATCAAGGAGATACTTAGACAGAAGAGTAAGAAAAGGCGACGCGAGAGTTTGGATGATCAATCAAGTTCACCTATCTAA 2802 0.4133 MEVLLLGLKGCFFLLILCLWIPKEVMGSTIGNSSVSSRPKVLKIGALFTVDSVIGKSAKAGIMLAIEDVNANSTVLSGFDLEVIYKDTNCSGFLGTVEALQLMENEVFAAIGPQSSGIAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFVRTTHSDYFQMYAIADLVDFYRWRQVIAIFVDDDNGRNGVAVLGDALAKKRGKISYKAALSPGASESNISDLLNGVNLMESRVFVLHVNPDTGLGIFNVAKSLGMMKSGYVWIATDWLPSKLDSMETVDTDTLKLLQGVVALRHHTPDTNLKKSFFSRLKNTKGMETARFNSYSLYAYDSVWLAAYALDAFLKQGGNISFSSDPKLVDTNGSMLHLSSLRVFDGGPSFLPTLLRMNFTGLSGQIQFDSENNLIQPSYDILNIGESGSRVGYWSNYSGLSVLTPEILYTRPPNTSSSNQKLFNVLWPGETIATPKGWVFPNNGEPLKIAVPHRISYLGFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPRKYILYGDGNRNPDYSQLVNEVALNTYDAAVGDVTIVPNRTRILDFTQPFMESGLVVVVPVKEIKSSPWAFLKPFTAQMWCVTGAFFLFVGAVVWILEHRHNPEFRGPPKKQIMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIESLISGTQPIGIQDGSFARRYLIDELNIQPSRIISLKDPKAYVDALTRGPKAGGVMAIVDELPYIELFMSSTDCKFRTVGQEFTKSGWGFGFQRDSPLAVDMSTAILQLSENGDLQKIHDKWISRHDCAAKVNDDVDSNELSLSSFWGLFLICGIACFLSLIAFFVRVFCQYMKFIPVDEEVDQENPSDRPRRTFRSSRSFKDLIGFVDKREKEIKEILRQKSKKRRRESLDDQSSSPI 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02057 933 Gene3D - 763 824 - -
Vifa1g02057 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Vifa1g02057 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Vifa1g02057 933 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 55 71 - -
Vifa1g02057 933 Coils Coil 902 922 - -
Vifa1g02057 933 SUPERFAMILY Periplasmic binding protein-like II 452 817 - -
Vifa1g02057 933 SUPERFAMILY Periplasmic binding protein-like I 37 468 IPR028082 -
Vifa1g02057 933 FunFam Glutamate receptor 587 717 - -
Vifa1g02057 933 FunFam Glutamate receptor 713 821 - -
Vifa1g02057 933 Pfam Ligand-gated ion channel 818 851 IPR001320 GO:0015276|GO:0016020
Vifa1g02057 933 CDD GluR_Plant 475 817 - -
Vifa1g02057 933 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 884 IPR015683 -
Vifa1g02057 933 PIRSF IGluLR_plant 8 932 IPR017103 -
Vifa1g02057 933 Gene3D - 157 429 - -
Vifa1g02057 933 FunFam Glutamate receptor 157 327 - -
Vifa1g02057 933 Gene3D - 62 405 - -
Vifa1g02057 933 CDD PBP1_GABAb_receptor_plant 43 431 IPR044440 -
Vifa1g02057 933 Gene3D - 588 707 - -
Vifa1g02057 933 Gene3D - 471 587 - -
Vifa1g02057 933 Pfam Bacterial extracellular solute-binding proteins, family 3 531 817 IPR001638 -
Vifa1g02057 933 Pfam Receptor family ligand binding region 62 413 IPR001828 -
Vifa1g02057 933 FunFam Glutamate receptor 471 587 - -
Vifa1g02057 933 SMART GluR_14 477 819 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02057 Vifa-Chr1 327581725 327585206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02057 38 788 Ion Channels AT1G05200 67.989 0.0 1105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02057 K05387 - gmx:100783715 1428.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02057 1 327581725 327585206 Vifa1g02057 1 327581725 327585206 ECH