Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02054 ATGCAAGGTAGTTTAATGATTCCAACCATAAACATGCCTTCAATGATCGGAAGAAACAACAACAACGTTGGTGTCTTTGAATTATCTTCTTCTCTTTCTCTTTCCCAGCCAAACCTAATGGAAGCTGGACAACTTCATCATCATCAGCTTCTACCACTCGACATGACACAGAACAACAACACTTCTGAAAGCGACGTTCAGAGAATCCGTGAAGATGAGTTCTTTGACAGTGCTACAAAATCTGGTAACAGTGAGAATCAAGAAGCGGCGAATTCGGGTGGCGAAGATCAAGAGCCTCGTGCTAAGAAAAAACGTTATCATCGTCATACACAGCATCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAATGTCCACATCCAGATGATAAGCAAAGGAAGGAACTGAGTAGAGAGTTAGGGCTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAACGTACTCAGATGAAGACTCAACAGGAGAGGCATGAGAATACCGCGCTTCGAACTGAGAATGAGAAGCTTCGTGCGGATAACATGAGGTTTCGAGAAGCTCTTAGTAATGCTTCTTGTCCTAATTGCGGTGGACCAACTGCGATTGGAGAGATGTCGTTTGATGAACATCATCTGAGGCTCGAAAATGCTCGACTAAGAGAAGAGATTGATAGGATATCTGCCATTGCCGCAAAGTACGTAGGCAAACCGGTGGTGAGTTATCCATTACTCTCTCCTTCATCCGGTACTCCTCGTCCTCTAGAACTCGGCATTGGTGGTTTTGGAGGACAACCAGGGCTGAGTGGAGGAGACATGTACGGAGCTGGAGATCTTCTTAGATCAATAAGTGGACCAACTGAAGCTGATAAACCGATGATAATTGAGCTAGCTGTTGCTGCTATGGAGGAACTCATTGGAATGGCACAAATGGGTGATCCTCTTTGGTTAACTACACTTGAAGGTGCTTCCATACTCAATGAGGAGGAGTATGTTCGGTCTTTTCCTCGAGGAATTGGTCCAAAACCTGCTGGTTTTAAATGCGAAGCTTCCAGAGAAACTTCTGTTGTCATCATGAATCATGTTAACCTTGTCGAAATCCTCATGGACGTGAACCAATGGTCCACAGTTTTTTCTGGTATTGTATCAAGAGGAATGACATTGGAAGTGCTCTCAACTGGAGTAGCAGGGAATTACAATGGCGCATTACAAGTGATGACAGCTGAACTACAAGTACCTTCACCACTTGTGCCAACAAGAGAGAGTTATTTTGTAAGGTATTGTAAACAACATGCTGATGGAACTTGGGCAGTTGTGGACGTTTCGTTGGACAATTTGCGCCCGAGTCCTTCTTCAAGATCTAGAAGAAGGCCTTCTGGTTGCCTAATTCAAGAAATGCCTAATGGCTACTCGAAGGTTATATGGGTTGAGCATGTAGAAGTTGATGAAAGGGGTGTTCATAATCTGTACAAACAACTTGTTAGCTCCGGGCATGCATTCGGCGCGAAGCGTTGGATTGCGACGTTAGATCGACAATGCGAAAGACTTGCTAGTGCCATGGCCACAAACATTCCCACAGTTGACGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGTATGTTGAAACTAGCTGAAAGAATGTGCATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACAGCTCACACATGGACAACACTTTCCGGTACCGGAGCCGACGATGTCCGCGTCATGACCCGTAAGAGCGTGGACGATCCAGGAAGACCAGCTGGCATTGTTCTTAGTGCGGCAACTTCTTTTTGGCTTCCAGTTTCACCAAAAAGAGTTTTTGAATTTCTCAGAGATGAAAACTCAAGAAATGAGTGGGATATTCTTTCTAATGGTGGAGTTGTCCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAACTGTGTTTCGCTACTTCGAGTGAATAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTGCAAGAGAGTTGCACAGACACAACAGGATCATTTGTGATATATGCACCAGTGGACATAGTTGCAATGAATGTGGTTCTAAATGGAGGTGATCCTGATTATGTTGCACTTCTTCCATCTGGATTTGCTATATTACCGGACGGAACAACTAATGGAGGAAATGGTGGTGGTGAAAGTGGTCATGGTGGTGGTGGTTCTCTATTGACTGTTGCATTTCAAATATTGGTTGATTCTGTTCCAACAGCAAAACTTTCTCTTGGATCTGTCGCTACCGTTAATAATCTCATTGCTTGTACTGTTGAGAGGATTAAGGCTTCTTTGTCTGGTGAAGTTGCTTGA 2325 0.4374 MQGSLMIPTINMPSMIGRNNNNVGVFELSSSLSLSQPNLMEAGQLHHHQLLPLDMTQNNNTSESDVQRIREDEFFDSATKSGNSENQEAANSGGEDQEPRAKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQQERHENTALRTENEKLRADNMRFREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPSSGTPRPLELGIGGFGGQPGLSGGDMYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTLEGASILNEEEYVRSFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRGMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSSRSRRRPSGCLIQEMPNGYSKVIWVEHVEVDERGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVSPKRVFEFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDTTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTNGGNGGGESGHGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEVA 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02054 774 FunFam Homeobox-leucine zipper protein GLABRA 2 294 512 - -
Vifa1g02054 774 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 100 769 IPR042160 -
Vifa1g02054 774 ProSiteProfiles 'Homeobox' domain profile. 100 160 IPR001356 GO:0003677
Vifa1g02054 774 SMART HOX_1 101 164 IPR001356 GO:0003677
Vifa1g02054 774 CDD START_ArGLABRA2_like 289 512 - -
Vifa1g02054 774 SUPERFAMILY Bet v1-like 533 766 - -
Vifa1g02054 774 CDD homeodomain 103 161 IPR001356 GO:0003677
Vifa1g02054 774 Coils Coil 159 186 - -
Vifa1g02054 774 Pfam Homeodomain 103 158 IPR001356 GO:0003677
Vifa1g02054 774 ProSitePatterns 'Homeobox' domain signature. 135 158 IPR017970 GO:0000981|GO:0006355
Vifa1g02054 774 SMART START_1 294 513 IPR002913 GO:0008289
Vifa1g02054 774 Gene3D - 341 510 IPR023393 -
Vifa1g02054 774 SUPERFAMILY Homeodomain-like 90 161 IPR009057 -
Vifa1g02054 774 Gene3D - 88 176 - -
Vifa1g02054 774 MobiDBLite consensus disorder prediction 79 93 - -
Vifa1g02054 774 FunFam Homeobox-leucine zipper protein HDG1 88 176 - -
Vifa1g02054 774 SUPERFAMILY Bet v1-like 285 515 - -
Vifa1g02054 774 ProSiteProfiles START domain profile. 285 516 IPR002913 GO:0008289
Vifa1g02054 774 MobiDBLite consensus disorder prediction 76 112 - -
Vifa1g02054 774 Pfam START domain 295 513 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02054 Vifa-Chr1 326876577 326880540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02054 69 774 Homeobox Transcription Factor Family AT1G05230 79.437 0.0 1137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g02054 START 1.5e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02054 K09338 - gmx:100797992 1306.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02054 1 326876577 326880540 Vifa1g02054 1 326876577 326880540 ECH