Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02049 ATGCTGGTGAATAAGGAGAAAAACTTTCATGTGGTGGACATAGAGAACAATGGTTGTCACCGGAGTCATCCTGAGGATGACTCCGATGACAGGTCAGATGAGGAGCAAGTGAATAGGTCAGAGATTGTGGGAGTGGATGAAAAACAAAGGGGTTCTGTTGATTCATCTGAATCAGTTGAATCTGTTGAGTTGGATCTGGATGGTGTAGTTGGTTCTGATGTTGATGTTAAGGTGCATTTGGATAAGGTGGAGAGAGATTGTAGGATTTGTCATCTTAGTATGGATATGACAAATCATGAATCTGGAGTTCCTATTGAGCTTGGATGTTCTTGTAAAGAGGATTTGGCTGCTGCTCATACACATTGTGCTGAGGCTTGGTTCAAGATTAAGGGAAACAAAACTTGTGAAATATGTGGCTCAATAGCGCACAATGTAGCTGGTGCTTTTGAAGTTCAAACGACAGAACAATTGAATGAAGCAAGTGATCCCTCTATTGGACCACCATCGGGACCTTCACCGCCAATCGAAACTCGAAACTTTTGGCAGGGACACCGGTTTTTGAACTTCCTTCTAGCATGTATGGTTTTTGCTTTTGTTATATCATGGCTTTTTCACTTTAATGTTCCCTCTTGA 633 0.4186 MLVNKEKNFHVVDIENNGCHRSHPEDDSDDRSDEEQVNRSEIVGVDEKQRGSVDSSESVESVELDLDGVVGSDVDVKVHLDKVERDCRICHLSMDMTNHESGVPIELGCSCKEDLAAAHTHCAEAWFKIKGNKTCEICGSIAHNVAGAFEVQTTEQLNEASDPSIGPPSGPSPPIETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02049 210 MobiDBLite consensus disorder prediction 1 58 - -
Vifa1g02049 210 SMART ringv_2 86 139 IPR011016 GO:0008270
Vifa1g02049 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 147 IPR013083 -
Vifa1g02049 210 MobiDBLite consensus disorder prediction 1 54 - -
Vifa1g02049 210 PANTHER ZINC FINGER, RING-CH-TYPE 19 209 - -
Vifa1g02049 210 ProSiteProfiles Zinc finger RING-CH-type profile. 79 145 IPR011016 GO:0008270
Vifa1g02049 210 Pfam RING-variant domain 87 138 IPR011016 GO:0008270
Vifa1g02049 210 SUPERFAMILY RING/U-box 84 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02049 Vifa-Chr1 324819010 324820344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02049 27 210 C3H Transcription Factor Family AT5G05830 60.753 2.10e-70 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02049 - - mtr:11413730 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01621 2 431858362 431859070 Vifa1g02049 1 324819010 324820344 ECH
Vifa1g02049 1 324819010 324820344 Vifa1g02049 1 324819010 324820344 ECH