Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02028 ATGAACGACCTTCTTACTGATTCATTTGTTAGTGAGGCTACTAATGGACAGCCTTCAAGACATGGTGATATTGAAATGGGAATGCAGGGTCCAGGAAGCAATTCTGATATGGGAATGGAAGCTTTTAATAAACAGATCCAAGATGCCGATAAACAAATCGAGAAGCTATCCGTACTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAGGCATCTGCCATGAAAGCCATCAAGAAGAGGATGGAAAAAGATATCGATGAAGTTGGTAAGATTGCATATGGTGTCAAAGCAAAAATAGAAGCTATCAACAGAGAAAATCTAAACCATAGACAAAAGCCTGGCTGTGAGAAGGGAACTGGTATTGATAGAGCAAGGATGAATATGACAAATTCCTTGACTAAAAAATTCAGGGATCTCATGACAGAGTTTCAGACTCTCAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCGGATGATGAGACGATTGACCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAACAGGCAATTCTTGAAGCAGGCCGAGGACAGGTAGTGAACACGGTAGAAGAAATTCAGGAGAGACACGATGCTGTGAAAGAAATCGAGAAAAAACTTCTTGATTTACATCAGATTTACCTCGACATGGCCGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATTGAGAGCCAGGTCAACAATGCAGTAGATCATGTCCAGAGAGGGACAACCGCACTTCAAAGTGCTAAGAAACTCCAAAAGAATTCTCGAAAATGGATGTGCATTGCCATCGTGATCCTGTTAATAATAGTAGCGATCATAGTTGTCGGTGTTATCAAACCTTGGAAGAGTAACAAGGGCGCTTGA 933 0.4084 MNDLLTDSFVSEATNGQPSRHGDIEMGMQGPGSNSDMGMEAFNKQIQDADKQIEKLSVLLQKLKEANEESKAVTKASAMKAIKKRMEKDIDEVGKIAYGVKAKIEAINRENLNHRQKPGCEKGTGIDRARMNMTNSLTKKFRDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQQAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQSAKKLQKNSRKWMCIAIVILLIIVAIIVVGVIKPWKSNKGA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02028 310 CDD SynN 39 196 IPR006011 GO:0016020
Vifa1g02028 310 SMART SynN_4 34 160 IPR006011 GO:0016020
Vifa1g02028 310 Gene3D - 34 163 - -
Vifa1g02028 310 FunFam Syntaxin 132 202 302 - -
Vifa1g02028 310 Gene3D - 202 302 - -
Vifa1g02028 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Vifa1g02028 310 PANTHER SYNTAXIN 39 291 IPR045242 -
Vifa1g02028 310 Pfam SNARE domain 245 297 IPR000727 -
Vifa1g02028 310 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Vifa1g02028 310 Coils Coil 39 76 - -
Vifa1g02028 310 CDD SNARE_syntaxin1-like 208 269 - -
Vifa1g02028 310 SMART tSNARE_6 204 271 IPR000727 -
Vifa1g02028 310 FunFam Syntaxin 132 34 163 - -
Vifa1g02028 310 MobiDBLite consensus disorder prediction 1 18 - -
Vifa1g02028 310 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Vifa1g02028 310 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02028 Vifa-Chr1 322562431 322565339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02028 1 310 SNARE and Associated Proteins AT3G03800 61.935 2.87e-127 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02028 K08486 - gmx:100800991 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02028 1 322562431 322565339 Vifa1g02028 1 322562431 322565339 ECH