Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02018 ATGAAAATTATTATTGCCACAAGAGTTAATCAATTTCTCATTGAAGTGGGTAACTTAGAAACAGTTATTGAAATCAAAAGGAAAATAGAAGAAACTCATGGTGTTCCGGTGGCTTACCAAATGCTAACAGTTTCTGGATGGGAACTCGTTGATGGATTAGACATGGAAGATTACCCAATAGTCACTGAAGGCACAAAAGTTGATCTCGCCATCAAGTCAGGGGTGTCACATTCCATTTACTATAATAAGAATATGCAAATCACAGTAAAGTTTCCAGCTAAAAAGACTAACATAGAGGTGGACCAGACAGATACTGTCCGTAGCTTGAAGGAAAAAATACACATCATTGCTAATATCCCCATCAAAAAAATGTCACTTTTCTTTTTGGGGAAGGAACTGAATGAAGATTTTCGAAACCTAAATGAGTATGGTATTTGTGAATTTTCTGAAATTATTGTGTTCCTCAAGACCACAAATCAGTCCAAAGAACCATCATCTAAGAAGGTGAGCTTTGTGGTACAAACTTCCTCTAGTTTGCTAAATGCAGCCACCATTCCAGTGGAGATGAGGGATATAAGCACTATTAATGACTTGAAGGAGTTGCTGATAGGTAGAAAAATTCTGCCGGTTGATGACTATTTGTTTATACACAGGCAGAGGATTATGCGTGATAGTTGTAGCCTTAGGTGGCATGGGGTTGAAAATGGCGACCATCTCTACGTATTCAAAGGGACGGCTAGTCGCAGTGGGTAA 753 0.3865 MKIIIATRVNQFLIEVGNLETVIEIKRKIEETHGVPVAYQMLTVSGWELVDGLDMEDYPIVTEGTKVDLAIKSGVSHSIYYNKNMQITVKFPAKKTNIEVDQTDTVRSLKEKIHIIANIPIKKMSLFFLGKELNEDFRNLNEYGICEFSEIIVFLKTTNQSKEPSSKKVSFVVQTSSSLLNAATIPVEMRDISTINDLKELLIGRKILPVDDYLFIHRQRIMRDSCSLRWHGVENGDHLYVFKGTASRSG 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02018 250 Gene3D - 157 249 - -
Vifa1g02018 250 PANTHER UV EXCISION REPAIR PROTEIN RAD23 85 174 - -
Vifa1g02018 250 Pfam Ubiquitin family 87 157 IPR000626 GO:0005515
Vifa1g02018 250 Pfam Ubiquitin family 8 72 IPR000626 GO:0005515
Vifa1g02018 250 SUPERFAMILY Ubiquitin-like 1 67 IPR029071 -
Vifa1g02018 250 SMART ubq_7 85 156 IPR000626 GO:0005515
Vifa1g02018 250 SMART ubq_7 1 72 IPR000626 GO:0005515
Vifa1g02018 250 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Vifa1g02018 250 SUPERFAMILY Ubiquitin-like 78 158 IPR029071 -
Vifa1g02018 250 Gene3D - 1 69 - -
Vifa1g02018 250 SUPERFAMILY Ubiquitin-like 180 243 IPR029071 -
Vifa1g02018 250 Gene3D - 84 156 - -
Vifa1g02018 250 ProSiteProfiles Ubiquitin domain profile. 169 241 IPR000626 GO:0005515
Vifa1g02018 250 ProSiteProfiles Ubiquitin domain profile. 85 160 IPR000626 GO:0005515
Vifa1g02018 250 CDD Ubl_ubiquitin_like 184 242 - -
Vifa1g02018 250 CDD Ubl_ubiquitin_like 87 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02018 Vifa-Chr1 321329388 321330140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02018 85 165 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.024 3.76e-06 43.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02018 1 321329388 321330140 Vifa1g02018 1 321329388 321330140 ECH