Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02015 ATGGAGCCCGTTTGCCCTATCTCCTCGTCTTGCGCCACTGAGATATCCGCTCTTCTATCTCCTCCCTCACCTCCCCAACTTCAGGAATATTATCACAACATTTTCTCTGCAACACTCTGCTCCGGTATCACCGTCAAACAAGATCACAACTTTGGAAAAGGTCTGTATGCTGCAATGGATTTCAAAGAGGATCAACTTGTTCTCAAGGACCAAATGCTTCTAGGGACTCAACACTCCTTCAACAAGATTGATTGTTTTGTGTGTAGCTTCTGCTTTCGTTTTATTGGTTCTATAGAAACTCAAATTGGAAGGAGGCTTTACTTGAGAGAATTAAAGGCCAATGAGAGTCATGCTTGTGATGTAGGAAGCTCTTCAAACTCTATTCAAAATTGTCATGAAATGGATTCGTCTGGTGAAGAAGAGAGCACTTTGCAACCTTGTTCGGGTAGTTTCAAAACTAGAGTTCCTCTCCCTGAAGGTGTTGTGGAATCGTTGATGAATGGTCAATTGAGATTGCCTTGCTCTGACAAGTTCTCCTTGCCTCCATCTGTTCCATGCTCTGGTGGATGTGGAGAAGCTTACTACTGCAGCATGTTGTGTGCAGAGGCTGATTGGGAATCCTCCCATTCTTTGCTCTGTACTGGTGAGAGTTCTGATCCAAGGCGTAGAGAGGCACTCCTTAAATTCGTGAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAGGCCATTTCATCTACCATATTAAGGTATCACAAGTTAAAAGCAAATTGTCCTAAGGAGAAACTGAAATATGATGCATCCTGTGTTTCAGACAACTCTAATTTCTCTCTTCTTTTGGAAGCTTGGAGACCTATATCAATGGGATACAAAAAGAGGTGGTGGGACTGCATTGCATTACCAGATGATATCGATTCTTCCGATGAAGCGTCATTCAGGATGCAAATAAAAGAGTTGGCATATGAGTCTCTCCAACTTCTTGAAACAGCAATATTTGACAAGGAATGCGAGCCGTTATTCTCCCTTGAAATCTATGGACATATCATTGGCATGTTTGAACTGAATAATCTTGATTTGGTTGTTGCTTCTCCCGTGGAGGATTACTTTCTATACATTGATGAAATGACAAACCCTGATAAGGAAGAAGCTGAGAAAATTACACAACCAATTCTAGATGCTCTAGGTGAAGACTATTCTACTTGTTGCGAAGGAACTGCATTTTTTCCTTTGCAAAGCTGTATGAACCATTCCTGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAGAGACGGCCAAGCAACAATAATTGCACTGAGGTCCATCCGTAAAGGAGAAGAGATAACCATTTCATATGTTGATGAAGACCTTCCATTTGAAGAGAGACAAGCATCCCTTGCAGATTACGGTTTTAGATGTAAATGTCCAAAGTGCATTGAACAAGAGCCATAA 1464 0.4126 MEPVCPISSSCATEISALLSPPSPPQLQEYYHNIFSATLCSGITVKQDHNFGKGLYAAMDFKEDQLVLKDQMLLGTQHSFNKIDCFVCSFCFRFIGSIETQIGRRLYLRELKANESHACDVGSSSNSIQNCHEMDSSGEEESTLQPCSGSFKTRVPLPEGVVESLMNGQLRLPCSDKFSLPPSVPCSGGCGEAYYCSMLCAEADWESSHSLLCTGESSDPRRREALLKFVKHANETNDIFLLAAKAISSTILRYHKLKANCPKEKLKYDASCVSDNSNFSLLLEAWRPISMGYKKRWWDCIALPDDIDSSDEASFRMQIKELAYESLQLLETAIFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDEMTNPDKEEAEKITQPILDALGEDYSTCCEGTAFFPLQSCMNHSCCPNAKAFKRDEDRDGQATIIALRSIRKGEEITISYVDEDLPFEERQASLADYGFRCKCPKCIEQEP 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02015 487 Gene3D SET domain 374 486 IPR046341 -
Vifa1g02015 487 Pfam SET domain 360 456 IPR001214 GO:0005515
Vifa1g02015 487 ProSiteProfiles SET domain profile. 41 457 IPR001214 GO:0005515
Vifa1g02015 487 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 486 IPR044237 GO:0008168
Vifa1g02015 487 SUPERFAMILY HIT/MYND zinc finger-like 181 214 - -
Vifa1g02015 487 SUPERFAMILY SET domain 40 480 IPR046341 -
Vifa1g02015 487 CDD SET_SMYD 396 482 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g02015 SET 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02015 - - gmx:100803651 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02015 1 321152773 321157014 Vifa1g02015 1 321152773 321157014 ECH