Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02004 ATGAACTCTTTAAGGCCATTCCTTCTTTTCCTTCTCACCTGCATTCTCATTCAACAAGCATGTTCCGATAAAGATCGCAAGACTTACATTGTCTACATGGGTGCACATCCTAAGGACATGGATCCCACCACCTTACCTTCTCTTCACTCCAAAATAGCTCAAAGTATCCTTGGCAGTGATTTTGAACCAGGAGCTGTACTTCACAGCTACCATAAGAGTTTTAATGGTTTCGTTGTGAAGTTGACCGAAGATGAGGCAGAAACATTGGCGGAAATGGACGATGTAGTATCTGTTTTTCCAAACACAAAGAATCGTCTTCACACGACAAAATCGTGGGACTTCATAGGCCTTCCACAAAATATCGAAAGAATGAGTTTGGAGAGTGATGTAATAGTTGGAGTAATAGACACGGGAATTTGGCCAGAGTCAAAGAGCTTCAGTTATGAAGGATTTGGTCCACCACCAAAAAAATGGAAGGGAACATGTCACAACTTCACTTGCAACAATAAAATAATTGGTGCAAGATACTTCAATATTGAAGGAAAATATGGTAAAAAGGATATAAAATCTCCAAGAGATGTAAATGGGCACGGATCACATTGCGCATCCACGGTTGCTGGAAACATGGTTAGTTCTGTAAGCCTAGAAGGGTATGCCTCCGGGACAGCACGTGGAGGAGTTCCTTCCGCTCGCATTGCTGTCTACAAAGTGTGTTGGGAAGAAGCTGGTTGCGAGGAGGCTGATATCCTTGCAGCTTTTGATTCAGCAATTGCTGACGGAGTTGATGTTCTTTCTGTTTCTCTTGGATCGACTCAAGTATCACCGTTAACTCAATATTTTCAACACTCAATCAACATTGGAAGTTTCCATGCAATGCAAAAGGGTGTGCTTACTTCGAATTCTGCTAATAATTTGGGCCCTGATCTTTTCACAATGACAAATTACCCACCTTGGTTACTTTCTGTTGCTGCTAGCACTTTTGGCAGAAAATTCGTTACAAAGGTCAAGTTAGGAAATGGTAAAGTCTATGAGGGGTCAACAATTAATACATTAGATCTCAAAAACAAAATGTTTCCAATAATTTTTGCAAGAGATATACCAAACACTGCTGGTGGATTCAACAGTTCTGTATCCAGATTCTGCAACAAGGACTCTGTAGATGAACATGCAGTAAAGGGAAAGATAGTTTTATGCGAGGGCATTAAGATTCCAACGGATGTCGGGTTCTTTTCTGGGGCTGCTGGTGTAATATTTGGATATGTTACTGCAAAAGATTTGCCAAATACATATGCTTTACCAGCCACATTTCTTAGTCTATGGAACCTAAGAGAAATACAATATTACATGAAATCATCAAGAAATCCTACTGCCACAATATTTAAGAGTGAAGAAGTTGAAGATTCGTCGTCCCCTTATGTAGCTTCCTTTTCATCAAGAGGTCCAAACCCAATTACACCGAATATTCTCAAGCCAGATATTGCTGCCCCAGGAGTTAATGTTATAGCCGCATGGACACCACTCGATCCGATTTCTGAATTTGAAGATGACAATAGAAGATTACCATATCAAATTATCTCGGGAACTTCAATGGCATGCCCTCATGCAGCTGCAGCAGCTGCATATGTTAAATCATTTCACCCCAATTGGTCTCCTGCTATGATCAAGTCTGCACTTATGACCACTGCAACACCAATGAGCCCGTCTATAAATCCTGAAGCGGAATTTGCATACGGTGCGGGGCTAATTAGTCCTGTTAAGGCAACAAATCCAGGTTTAGTATATGATATGAGTGAAGCAGATTATGTGGAGTTCTTGTGCGGAGAAGGATACACGGATAAACAACTAGTAAATCTTACTCGTTATAAGAGTGATTGCAAGGGAAAAGCTAATGGGAAAGCTGTATACAAATTGAACCTCCCATCATTTGCACTTGAAGTAAACGACACATTTTCGGGATATGTTTACCATAGAACCATTACAAATGTGGGATCACCAAAGTCTACTTATAAAGCAAGAGTAATATCTTCTCCTTTGTTGGAAATTCAAGTTAAACCCGATGTTCTGTCTTTTACATCTATAGGACAGAAAAAATCATTCTCGCTAACAATAGAAGGAGACGTCAATGTGGGAATAATGTCTTCTTCTTTGATATGGGATGATGGCAAATATCAAGTTAGAAGCCCTATTGTAGTGTATGGGAGCTAA 2205 0.4018 MNSLRPFLLFLLTCILIQQACSDKDRKTYIVYMGAHPKDMDPTTLPSLHSKIAQSILGSDFEPGAVLHSYHKSFNGFVVKLTEDEAETLAEMDDVVSVFPNTKNRLHTTKSWDFIGLPQNIERMSLESDVIVGVIDTGIWPESKSFSYEGFGPPPKKWKGTCHNFTCNNKIIGARYFNIEGKYGKKDIKSPRDVNGHGSHCASTVAGNMVSSVSLEGYASGTARGGVPSARIAVYKVCWEEAGCEEADILAAFDSAIADGVDVLSVSLGSTQVSPLTQYFQHSINIGSFHAMQKGVLTSNSANNLGPDLFTMTNYPPWLLSVAASTFGRKFVTKVKLGNGKVYEGSTINTLDLKNKMFPIIFARDIPNTAGGFNSSVSRFCNKDSVDEHAVKGKIVLCEGIKIPTDVGFFSGAAGVIFGYVTAKDLPNTYALPATFLSLWNLREIQYYMKSSRNPTATIFKSEEVEDSSSPYVASFSSRGPNPITPNILKPDIAAPGVNVIAAWTPLDPISEFEDDNRRLPYQIISGTSMACPHAAAAAAYVKSFHPNWSPAMIKSALMTTATPMSPSINPEAEFAYGAGLISPVKATNPGLVYDMSEADYVEFLCGEGYTDKQLVNLTRYKSDCKGKANGKAVYKLNLPSFALEVNDTFSGYVYHRTITNVGSPKSTYKARVISSPLLEIQVKPDVLSFTSIGQKKSFSLTIEGDVNVGIMSSSLIWDDGKYQVRSPIVVYGS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02004 734 CDD PA_subtilisin_like 335 459 - -
Vifa1g02004 734 Pfam Fibronectin type-III domain 637 731 IPR041469 -
Vifa1g02004 734 Gene3D Peptidase S8/S53 domain 129 601 IPR036852 GO:0004252|GO:0006508
Vifa1g02004 734 PRINTS Subtilisin serine protease family (S8) signature 193 206 IPR015500 -
Vifa1g02004 734 PRINTS Subtilisin serine protease family (S8) signature 526 542 IPR015500 -
Vifa1g02004 734 PRINTS Subtilisin serine protease family (S8) signature 127 146 IPR015500 -
Vifa1g02004 734 Pfam Peptidase inhibitor I9 28 107 IPR010259 -
Vifa1g02004 734 ProSiteProfiles Serine proteases, subtilase domain profile. 111 588 - -
Vifa1g02004 734 Pfam Subtilase family 128 580 IPR000209 GO:0006508|GO:0008236
Vifa1g02004 734 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 29 731 IPR045051 -
Vifa1g02004 734 SUPERFAMILY Subtilisin-like 106 592 IPR036852 GO:0004252|GO:0006508
Vifa1g02004 734 FunFam Subtilisin-like protease SBT1.5 129 341 - -
Vifa1g02004 734 Gene3D - 328 466 - -
Vifa1g02004 734 ProSitePatterns Serine proteases, subtilase family, serine active site. 527 537 IPR023828 -
Vifa1g02004 734 Gene3D - 605 733 - -
Vifa1g02004 734 CDD Peptidases_S8_3 106 563 IPR034197 -
Vifa1g02004 734 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 14 107 IPR037045 -
Vifa1g02004 734 ProSitePatterns Serine proteases, subtilase family, histidine active site. 197 207 IPR022398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02004 Vifa-Chr1 320603088 320606319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02004 11 732 Subtilisin-like Serine Gene Family AT3G46850 46.247 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02004 - - gmx:100815516 1009.59