Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02000 ATGGATACCAACAACAACAACAACAAAAACTATAACACCTCTCCACTCTCTCATCATCAAAACAAACCCATCATTCATGAATTCGATTTTTTCTCTCTAAATAGCACCAACCATGCATCTACTTCTGCGCCTCCCTCTCATCATTACACCCCCTCTTCTCTTCCTGAATTCAAAGTAAACACTAGTTTGAATCTTCTTACCACAAACACAAGCAGTGATGAATCCAAGGTGGAACCTGACATATCAACTAATTCGGAAGACAAAAAAGTTGTTGATCTTCAAGCTGAGCTTGAGAGAAAGAAGGCTGAGAATCACCAGCTGAGGAACATGTTTGATGAGGCTAAGATGAATTACGAGGCGCTGCGCATGCATATGTTGAGTTTGATGCAGGAGGAGAGAAAGGTAGAGGATTGTAAAGAAGAGGAACAAGATGTTGCGAATGACGATGAGGAAGGTTCTAAGGATGAAGAAGTTTTGTTTGATCATGATAACAAGGAATCTGATCGCGGAAATGAAAGAAATGATAGTCCTTCAAACCAAGTTTTAGGTGCTAATAATAATGATACTAATAATGTTTCAAATTTTAGTCCTCAAACTAATGTGGAAGAAGCTGAGGCATCAATGAAGAAAGCAAAGGTTTCAGTTCGAGCTCGATCTGAGGCTAATATGATCAATGATGGGTGTCAATGGAGAAAGTATGGACAGAAGATGGCGAAAGGAAATCCGTTTCCTCGAGCTTATTATCGATGCACCATGGCTTTAAATTGTCCTGTGAAAAAACAGGTACAAAGGTGTGCCGAGGACAAATCGATATTGGTAACAACATACGAAGGAAATCACAACCATGCTTTGCCACCAGCAGCTATAGAAATGGTACAACAAACATCATCAGCTGCAAGAATGTTACTATCAGGACCAATGACAAGTCCTGATGGACTAATGAATCCAAATTTTCTCACAAGAACAGTGTTTCCTTCTTCTTCAAGCATTGCAACTATTTCGGCATCAGCTCCATTTCCAACCATTACATTGGACTTAACTCAATCACCAAATAATCCATTACAGTTTCCTACTCAGACATTGTTTAATCACTCACGATTTTCAGGACTTCAAATGTCTCAAGATGCAGAAACTTCTCAATCTCAACAGACATCACAGAATCTTACAGCTGATCCTGACTTGACTGCAGTTTTGGTAGCTGCTCTTACTTGCATGATTGGGGCTCCACAACCAAACAATAACAACACAAAAACCAATAACAATAATGGAAATGTTATATAA 1281 0.3911 MDTNNNNNKNYNTSPLSHHQNKPIIHEFDFFSLNSTNHASTSAPPSHHYTPSSLPEFKVNTSLNLLTTNTSSDESKVEPDISTNSEDKKVVDLQAELERKKAENHQLRNMFDEAKMNYEALRMHMLSLMQEERKVEDCKEEEQDVANDDEEGSKDEEVLFDHDNKESDRGNERNDSPSNQVLGANNNDTNNVSNFSPQTNVEEAEASMKKAKVSVRARSEANMINDGCQWRKYGQKMAKGNPFPRAYYRCTMALNCPVKKQVQRCAEDKSILVTTYEGNHNHALPPAAIEMVQQTSSAARMLLSGPMTSPDGLMNPNFLTRTVFPSSSSIATISASAPFPTITLDLTQSPNNPLQFPTQTLFNHSRFSGLQMSQDAETSQSQQTSQNLTADPDLTAVLVAALTCMIGAPQPNNNNTKTNNNNGNVI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02000 426 MobiDBLite consensus disorder prediction 142 156 - -
Vifa1g02000 426 Gene3D WRKY domain 209 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g02000 426 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 70 418 IPR044810 GO:0003700
Vifa1g02000 426 SMART WRKY_cls 224 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g02000 426 Pfam WRKY DNA -binding domain 225 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g02000 426 Coils Coil 128 148 - -
Vifa1g02000 426 Coils Coil 83 117 - -
Vifa1g02000 426 MobiDBLite consensus disorder prediction 174 196 - -
Vifa1g02000 426 MobiDBLite consensus disorder prediction 133 196 - -
Vifa1g02000 426 MobiDBLite consensus disorder prediction 157 173 - -
Vifa1g02000 426 FunFam probable WRKY transcription factor 31 209 286 - -
Vifa1g02000 426 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g02000 426 SUPERFAMILY WRKY DNA-binding domain 217 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g02000 426 MobiDBLite consensus disorder prediction 370 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02000 Vifa-Chr1 320465260 320467096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02000 59 422 WRKY Transcription Factor Family AT1G62300 44.419 1.60e-95 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g02000 WRKY 4.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02000 - - psat:127086719 528.865