Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01999 ATGGAAGCACTATGTGAGTTTTGTGAGATTGTTAGAGCTGTGGTTTACTGCAAGCCAGATTCCGCTCGTTTATGTCTTCGTTGCGATGCGATTGTACATTCCGCGAACGCGCTTTCTCGGAGACATCCGAGAAGTTTGTTGTGTGATAAGTGTAATATCGATTCCGCGATTGTTCGTTGTGTTGATTATAAACTGTCTCTGTGTCAATTTTGTGATTGGAATTCTAGTGGTGAGTGTTTTGTGTTGGGGCATAGCCATGCGCTACTTAGTTTCTACACTGGTTGTCCGTCTTTGGCAGAGTTGTCAAAGATTTGGCCACATTTTGTCGATGGGAGTTTATCGGTTGAGAGTAGTGTTGCTAGCTGTCAGCCGTTGGATTGGACGCATGAAAAGAACGATGGTTTCTTTGGTTTGGAGAAGGTGAAAAATAAGATGGACGGAGAAGAGCCGTCTGTTAAATATGAACAATCTTGGATTGAGACACCGCCTATTGTTTCGTCAAATTCAAATGGCGCACAATACTGCAAAGATCAAGCGTTTTTGTTTGATCCAGACTCGAACCTACCGAAGCTTCAAGGATGCCCTGATGTCAAGGAACTAGTTTTTCACGAGGAGACTAGTCTTTGTGAAGGTTTCAATGTAGATGATGTTCAATTAAACTTTGAAAGTGCTGAGGAGATATTTGGCTGCTCTCAAAGTGCCGCAAAATACAACCATGAAGATAGAGGAATAGAGTGTCTATTAATGGATAAAAACACTCAAGTCACAAAATGTACCAGTCTTACCGAGACTGCAGCAGAGGCTTTATCACCAGTGCAACAAGATTGTGTGGCTTTTCCATTATCAGGTGCTGGCGGATCAACAAGTGTGATGCAGGGCATTAACCATAATGCAAATTGTGCACTTATGACTCCTAGCTGCAACAGTAGCATTACTATGGGATTTCCTCAGAGTCAAATTCATTCAGGAACTTCAATTGAATTACCTAATCTTAATTGTGAAAACAATGTTACTGAACTTCTAAATTGTGGGTTACCTCCAGTGTTTCATCCCGGAGAATCCCCTTGGGAACCAAATTTGGAGGGTACGTGTGCAGAAGCAAGGGAACAAGCCAAAATGAGATACCAAGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCCTCTCGCAAAGCAAGGGCTGATACAAGGAAACGTGTGAAAGGTCGATTCGTTAAAGCAGGTGAAGCATACGATTATGATCCTCTTTTGAGCGACTACTAA 1272 0.4198 MEALCEFCEIVRAVVYCKPDSARLCLRCDAIVHSANALSRRHPRSLLCDKCNIDSAIVRCVDYKLSLCQFCDWNSSGECFVLGHSHALLSFYTGCPSLAELSKIWPHFVDGSLSVESSVASCQPLDWTHEKNDGFFGLEKVKNKMDGEEPSVKYEQSWIETPPIVSSNSNGAQYCKDQAFLFDPDSNLPKLQGCPDVKELVFHEETSLCEGFNVDDVQLNFESAEEIFGCSQSAAKYNHEDRGIECLLMDKNTQVTKCTSLTETAAEALSPVQQDCVAFPLSGAGGSTSVMQGINHNANCALMTPSCNSSITMGFPQSQIHSGTSIELPNLNCENNVTELLNCGLPPVFHPGESPWEPNLEGTCAEAREQAKMRYQEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLLSDY 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01999 423 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vifa1g01999 423 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 413 - -
Vifa1g01999 423 ProSiteProfiles CCT domain profile. 368 410 IPR010402 GO:0005515
Vifa1g01999 423 CDD Bbox1_BBX-like 4 47 - -
Vifa1g01999 423 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vifa1g01999 423 Pfam CCT motif 368 410 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01999 Vifa-Chr1 319596522 319600290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01999 1 418 C2C2-CO-like Transcription Factor Family AT3G21880 38.810 1.93e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g01999 CCT 2.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01999 - - gmx:100804738 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01999 1 319596522 319600290 Vifa1g01999 1 319596522 319600290 ECH