Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01998 ATGTGCAAAGGAGCAGCAGAACCAAAAGGACGCAAGTTCTTCCCAACAACTTCATTTGATCACAAAACAAGAGATTCTATATGTTGTGAGCTATGTGGATTACAAGCTTCATTGTATTGTCAAGCTGATGATGCATATTTGTGTAGAAAATGTGATGAAAAAGTTCATGAGGCTAATTTCTTGGCCCTTAGACATATTAGGTGTTTTCTTTGCAACACATGTCAAAACCTTACAAGAAGATATCTTGTTGGAGCATCATTGGAGATGATACTTCCTGCAAACATAAGCTGGAACAAAGGAAACTTGCCTCATAACAGCAACCTTATAAAGTGTTCAACAACACATAATAGTAGTTCCATGTTTCCTTAA 369 0.3659 MCKGAAEPKGRKFFPTTSFDHKTRDSICCELCGLQASLYCQADDAYLCRKCDEKVHEANFLALRHIRCFLCNTCQNLTRRYLVGASLEMILPANISWNKGNLPHNSNLIKCSTTHNSSSMFP 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01998 122 CDD Bbox1_BBX-like 28 70 - -
Vifa1g01998 122 ProSiteProfiles Zinc finger B-box type profile. 24 65 IPR000315 GO:0008270
Vifa1g01998 122 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 28 78 - -
Vifa1g01998 122 Pfam B-box zinc finger 27 65 IPR000315 GO:0008270
Vifa1g01998 122 SMART bboxneu5 24 70 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01998 Vifa-Chr1 319139028 319139396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01998 1 107 C2C2-CO-like Transcription Factor Family AT3G21890 42.727 5.66e-22 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g01998 zf-B_box 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01998 - - gmx:100305571 179.104