Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01995 ATGGAGAGAATTCTCTTTGCTGTATTCACTTGTGTTCTAGCACTTGGAGGTTCGATAATAGGAACAATAGGAGGAGCTATAAAAGGCCAAACCACAGAAGCTGCTTCTGATGGTGAGTCATTTTCCAAGGTTGCTTTGTTGACAAGTTTATTAAATGGAAAAGTGTTTATGGAATGGATATGTCCAACTGTGGCACAAGCTTATATAAATTCAGTAGAAGCAGCTTATGGAGGAGTGGTTTCAGATATTTATGACAGCATGGGAGTTAAAGGGATGTCACAAACTTGTATTATGAAACTCCCATTTCATAAATTTAACTCTTCCGACAAAATTATGAAATTATACAATGAATCATGCTGCTCAATTTGCTTCCAGGATTTTGAGAACGGAGAATTGGTGAGAATACTTCCAAAATGTTGTCACATTTATCATTTAGAATGCATTGACAAATGGCTAGTACAACAAGGATCGTGTCCTATTTGTAGAACTTATATTCTTCAATAG 504 0.3591 MERILFAVFTCVLALGGSIIGTIGGAIKGQTTEAASDGESFSKVALLTSLLNGKVFMEWICPTVAQAYINSVEAAYGGVVSDIYDSMGVKGMSQTCIMKLPFHKFNSSDKIMKLYNESCCSICFQDFENGELVRILPKCCHIYHLECIDKWLVQQGSCPICRTYILQ 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01995 167 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Vifa1g01995 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 166 IPR013083 -
Vifa1g01995 167 SMART ring_2 120 161 IPR001841 -
Vifa1g01995 167 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 40 163 IPR044523 -
Vifa1g01995 167 Pfam Ring finger domain 120 162 IPR001841 -
Vifa1g01995 167 SUPERFAMILY RING/U-box 113 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01995 Vifa-Chr1 319007939 319008970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01995 1 165 C3H Transcription Factor Family AT5G66070 31.527 2.36e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01995 - K19041 mtr:11435458 243.432