LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01994	ATGAAGGGTAGGTCTTATATTGGTGTTTTGGTTCTTATTGTTTGTCTTAATTCACTTTTAGTGAAATATTACTCATATTTTTCAGACAACGAAGATAAGACTTATATTATCTATACGGACAATACAAGAAACAATGGAACATCTCTATTACTTCACTACAAAAGTGTGCTTCAGCAAGTTACAAAAAGACACCTGCCAAAAACAATACTTCAATACTACAAGAAGAGTTTCAGCGGTTTTGTAGCCAAGCTTACGAAAGAAGAAGCCAACAAAATGGCTGGACTCAAAGGAGTGGTGTCTGTTTTCCTTAATCAAAAGAGAATTTGGCCGGAATCTTCTAGTTTCAATGATAAAGGTTTTGGTCCGCTACCTACCAAATGGAACGACAGTTGCATCGCTTTTTATTTTTCTTGCAACAGAAAAATCATTGGAGCTAAGTATTACTTATCAACTTCAAATGAACCGTTGAGCCAAGCAGATTTTGAATCTCCAAGAGATTCAAAGGGACATGGAACTCATACAGCATCAACTGCAGCTGGGAACCCAGTTACCATAGCAAGCATGCTAGGACTTGCACAAGGAACAACAAGATTTGCAATCCCTATTCTTGCCGCATTTGACGAAGCAGTTCTTGATGGGGTTGATATATTATCAGTATCACTTAGATCTGATTCAATAGACAACAGCAATCATTTTAAGGATGTAATTTCTATTGGAGCATTCCATGCAATGCGTCAAGGAGTACTTACGGTAGTGGCAGGAGGAAACTTCGGTCCACGCCCTGCATCCTTACATAATCTATCACCATGGACGATTGTTGTTGGTGCTAGTACGTTAGATAAAAGATTTATCACCGCGGTCAAATTAGGAGACAATAGAACATATGAGGGTGTCTCACTAAATGCATTTGATCTTGAGGAAACATTATACCCTATAATTTTCGGAGGAGATGCATCAAACACAATATTAGACGTGTTTCGACGTAAATCCAGGTTTTGTTTAAACAACACCTTAGATGTAAGACTGGTGAAGGGTAAAATTGTTTTATGTGAAGGAAAGGAAGGAGTTGAAGAAGCCTTCAGAGTGGGTGCTATTGGTATCTTGATGTATGGTCCCACTTTACCAGAAAAGGCACTGTCTTATCCCTTACCTGCATGCTTTCTTCAAACCAAAGATGTCATCGGTATATTTAAATACATTAGTTCGACAAGGAATCCAGTTGCCACAATATTGAAGACCTATGAGTTAAACGATACGTTGGCAGCTGTGGTTGCCTCTTTCTCCTCTAGGGGTCCAAACACTGCTATATCTGAGATATTGAAGCCCGATTTAACTGCTCACGGCATAAATATTTTAGCTAGTTGGCCTTCAAATCTTCCTATCTTGGATATTCTTGGCGACACTAGAAAATCGGAGTTTGATATTAAATCAGGAACATCAATGTCTTGTCCGCATGAATCTGGGGCAGCAGCATACGTCAAGTCATTTCACCTTACATGGTCCCCTGCTGCTATCCTCTCGGCTTTAATGACAACTGATAATAGCAGTTGCTCGGAAATAACACCTGCATTAGCAAGAGATTTGAACTATCCATCCTTTGCTTTAAAAGCCTCACATTCTAAACAACATGTCAGTGGAAGATTTCATAGAACTGTCACCAATGTTGGAACACCATTCTCTACGTATAGAGCAATTGTGACACTTCCAAAAGGATTACATATTTATGTGATACCTATTGTTTTGTCATTCACTTCACTAGGCGAAAACCATACATATGTTGTCATTGTTGATGGAGTTTTGAAGAAATCAATGGAATCAGCTTCTCTGACTTGGGATGATGGATATTTCAAAGTTAGAAGTCCGATTGTTGTTTTCCACGAACGAGCTGAGAGGGTTGCAACATCTTCAACTTTAACAAATGTTGTTATTATTATCCCCACATTCTCGAACACTGTACAACTATTGTCTCCTCCATTTTACGACCCATTTTCTCCGACCCATTTTCTCCGCGACTTCATTCGCCGCGACGCCCACCGCTGCCATTTTTTCCGACCCATTTCCACCGTCAACGAATCACCTTCGTCGCGACTCCCACCGCTGCCCACCGCGACGCCCACCTATGCCCACTGCGACGCCCGCCGCGACGCTATTAATGCCGTGAACGACTTCACCATCTCCGTTTCACGACTCCTCTCCGCCGATTGCCCTTCACGACTCTTCGCTCGCCGTTTCAACTGTAAGTGCAAATTTTTGTTTGAAAATGAGTGA	2268	0.4101	MKGRSYIGVLVLIVCLNSLLVKYYSYFSDNEDKTYIIYTDNTRNNGTSLLLHYKSVLQQVTKRHLPKTILQYYKKSFSGFVAKLTKEEANKMAGLKGVVSVFLNQKRIWPESSSFNDKGFGPLPTKWNDSCIAFYFSCNRKIIGAKYYLSTSNEPLSQADFESPRDSKGHGTHTASTAAGNPVTIASMLGLAQGTTRFAIPILAAFDEAVLDGVDILSVSLRSDSIDNSNHFKDVISIGAFHAMRQGVLTVVAGGNFGPRPASLHNLSPWTIVVGASTLDKRFITAVKLGDNRTYEGVSLNAFDLEETLYPIIFGGDASNTILDVFRRKSRFCLNNTLDVRLVKGKIVLCEGKEGVEEAFRVGAIGILMYGPTLPEKALSYPLPACFLQTKDVIGIFKYISSTRNPVATILKTYELNDTLAAVVASFSSRGPNTAISEILKPDLTAHGINILASWPSNLPILDILGDTRKSEFDIKSGTSMSCPHESGAAAYVKSFHLTWSPAAILSALMTTDNSSCSEITPALARDLNYPSFALKASHSKQHVSGRFHRTVTNVGTPFSTYRAIVTLPKGLHIYVIPIVLSFTSLGENHTYVVIVDGVLKKSMESASLTWDDGYFKVRSPIVVFHERAERVATSSTLTNVVIIIPTFSNTVQLLSPPFYDPFSPTHFLRDFIRRDAHRCHFFRPISTVNESPSSRLPPLPTATPTYAHCDARRDAINAVNDFTISVSRLLSADCPSRLFARRFNCKCKFLFENE	755

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01994	755	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	62	514	IPR045051	-
	Vifa1g01994	755	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	23	107	IPR037045	-
	Vifa1g01994	755	Pfam	Peptidase inhibitor I9	34	107	IPR010259	-
	Vifa1g01994	755	PRINTS	Subtilisin serine protease family (S8) signature	166	179	IPR015500	-
	Vifa1g01994	755	PRINTS	Subtilisin serine protease family (S8) signature	477	493	IPR015500	-
	Vifa1g01994	755	Pfam	Subtilase family	146	514	IPR000209	GO:0006508\|GO:0008236
	Vifa1g01994	755	ProSitePatterns	Serine proteases, subtilase family, serine active site.	478	488	IPR023828	-
	Vifa1g01994	755	Gene3D	Peptidase S8/S53 domain	108	197	IPR036852	GO:0004252\|GO:0006508
	Vifa1g01994	755	CDD	PA_subtilisin_like	287	410	-	-
	Vifa1g01994	755	MobiDBLite	consensus disorder prediction	158	178	-	-
	Vifa1g01994	755	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	541	-	-
	Vifa1g01994	755	Pfam	Fibronectin type-III domain	527	624	IPR041469	-
	Vifa1g01994	755	SUPERFAMILY	Subtilisin-like	136	514	IPR036852	GO:0004252\|GO:0006508
	Vifa1g01994	755	Gene3D	Peptidase S8/S53 domain	202	522	IPR036852	GO:0004252\|GO:0006508
	Vifa1g01994	755	Gene3D	-	280	417	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01994	Vifa-Chr1	318947741	318957164	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01994	31	625	Subtilisin-like Serine Gene Family	AT5G59100	37.171	3.62e-132	407

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01994	-		-	cam:101506276	715.687