LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01992	ATGCAGACTTATATTATCTATACGGGTAATACCATAAACAATGAAACATCTCTATTGCTTCACTACAAAAGTTTGCTTCACCAAGTTATAAAAAGACACCAGCCAAAAACAATACTTCAATACTACAAGAAGAGTTTCGGCGGTTTTGTAGCCAAGCTTACCAAGGAAGAAGCCAACAAAATGGCTGGACTCAAAGGAGTGGTGTCTGTTTTTCTTAATCAAAAGAGAGACATCCTTACCACCAAGTCATGGGACTTTGTTGGTCTTACACAATATGTTGAAAGAAAATATTATGAAAGTGATGTCATTGTCGGGGTTATTGATACAGGAATTTGGCCGGAATCTTCTAGTTTCGGTGATAAAGGTTTTGGTCCGCTACCTACCAAATGGAACGGCAGTTGCATCGCTTTTAATTTCACTTGCAACAGAAAAATCATTGGAGCTAAGTATTACTTATCAACTTCAAATGAACCGTTGAGCCAAGCAGATTTTGAATCTCCAAGAGATTCAAAGGGGCATGGAACTCATACAGCATCAACTGCAGCTGGGAACCCAATTACCATAGCAAGCATGCTAGGACTTGCACAAGGAACAGCAAGAGGTGCAGTCCCGTCTGCACGCATTTCTGTATACAAAGTTTGCTGGTCTACTGGATGCTTTGATGAAAGTATTCTTGCCGCATTTGACGAAGCAATTCTTGATGGGGTTGATATATTATCAGTATCACTTGGATCTGATTCAATAGACAACAGCAATCATTTTAAGGATGCAATTTCTATTGGAGCATTCCATGCAATGCGTCAAGGAGTACTTACGGTAGTGGCAGGAGGAAACTTCGGTCCACGCCCTGCATCCTTACATAATCTGTCACCATGGGCGATTGTTGTTGGTGCTAGTACTTTAGATAGAAGATTTATCACCACGGTCAAATTAGGAGACAATAGAACATATGAGGGTGTCTCACTTAATGCATTTGATCTTGAGGAAACATTATACCCTATAATTTTCGGAGGAGATGCATCAAACACAATATTAGACGTGTTTCGACGTAAATCCAGGTTTTGTTTAAACAACACCTTAGATGTAAAACTGGTGAAGGGTAAAATTGTTTTATGTGAAGGAAAGGAAGGAGTTGAAGAAGCCTTCAGAGTGGGTGCTATTGGTATCTTGATGTATGGTCCCACTTTACCAGAAAAGGCACTGTCTTATCCCTTACCTGCATGCTTTCTTCAAACCAAAGATGTCACTGGTATATTTAAATACATTAGTTCCACAAGGAATCCAGTTGCCACAATATTGAAGACCTATGAGTTAAACGATACGTTGGCACCTGTGGTTGCCTCTTTCTCATCTAGGGGTCCAAACACTGCTATATCTGAGATATTGAAGCCCGATTTAACTGCTCCAGGCATAAATATTTTAGCTAGTTGGCCTTCAAATCTTCCTATCTCGGATATTCTTGGCGAGACTAGAAAATCGGAGTTTAATATTAAATCAGGAACATCAATGTCTTGTCCACATGTATCTGGGGCAGCAGCGTACGTCAAGTCATTTCATCCTACATGGTCGCCTGCTGCTATCCGCTCGGCTTTGATGACAACTGCTAAAAAGATGAGTCCTGTTAATAATAGAGACGCGGAATTTGGTTATGGAGCCGGGGAAGTTGATCCAGTTAAAGCATTACATCCTGGTTTAGTATATGATGCTGATGAAGAGGATTATATTAAACTTTTATGTGGCCATGGCTTCAATACAACCGCTGCTCTACAATTAATCACGGGAGATAATAGCAGTTGCTCGGAAATAACACCAGGATCAGCAAGAGACTTGAACTATCCATCCTTTGCTTTAAAAGCTGCACATCCTAAACAACATGTCAGTGGAAGATTTCATAGAATTGTCACCAACGTTGGAACACCATTCTCTACATATAGAGCAATTGTGACAGCTCCAAGAGGATTACATATTTATGTGATACCTAGTGTTTTGTCATTCACTTCACTAGGAGAAAACCATACATATGTTGTCATTGTTGATGGAGTTTTGAAGAAATCAATGGTATCAGCTTCTCTGACTTGGGATGATGGATATTTCAATGTTAGAAGTCCCATTGTTATTTTCGACGAACGAGCCGAGAGGGTTGCAACATCTTCAACTTTAAGAAATGTTGTTATTATTACCGTTGTTGTTATTTTTTTTAGTTTTGCTATTATTATTATTAGATATAAGGAATTGTGTATTTTTCTATAA	2250	0.3916	MQTYIIYTGNTINNETSLLLHYKSLLHQVIKRHQPKTILQYYKKSFGGFVAKLTKEEANKMAGLKGVVSVFLNQKRDILTTKSWDFVGLTQYVERKYYESDVIVGVIDTGIWPESSSFGDKGFGPLPTKWNGSCIAFNFTCNRKIIGAKYYLSTSNEPLSQADFESPRDSKGHGTHTASTAAGNPITIASMLGLAQGTARGAVPSARISVYKVCWSTGCFDESILAAFDEAILDGVDILSVSLGSDSIDNSNHFKDAISIGAFHAMRQGVLTVVAGGNFGPRPASLHNLSPWAIVVGASTLDRRFITTVKLGDNRTYEGVSLNAFDLEETLYPIIFGGDASNTILDVFRRKSRFCLNNTLDVKLVKGKIVLCEGKEGVEEAFRVGAIGILMYGPTLPEKALSYPLPACFLQTKDVTGIFKYISSTRNPVATILKTYELNDTLAPVVASFSSRGPNTAISEILKPDLTAPGINILASWPSNLPISDILGETRKSEFNIKSGTSMSCPHVSGAAAYVKSFHPTWSPAAIRSALMTTAKKMSPVNNRDAEFGYGAGEVDPVKALHPGLVYDADEEDYIKLLCGHGFNTTAALQLITGDNSSCSEITPGSARDLNYPSFALKAAHPKQHVSGRFHRIVTNVGTPFSTYRAIVTAPRGLHIYVIPSVLSFTSLGENHTYVVIVDGVLKKSMVSASLTWDDGYFNVRSPIVIFDERAERVATSSTLRNVVIITVVVIFFSFAIIIIRYKELCIFL	749

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01992	749	Pfam	Fibronectin type-III domain	609	706	IPR041469	-
	Vifa1g01992	749	Pfam	Peptidase inhibitor I9	3	77	IPR010259	-
	Vifa1g01992	749	ProSiteProfiles	Serine proteases, subtilase domain profile.	83	561	-	-
	Vifa1g01992	749	Gene3D	Peptidase S8/S53 domain	101	574	IPR036852	GO:0004252\|GO:0006508
	Vifa1g01992	749	Gene3D	-	578	708	-	-
	Vifa1g01992	749	FunFam	Subtilisin-like protease SBT1.5	101	316	-	-
	Vifa1g01992	749	ProSitePatterns	Serine proteases, subtilase family, serine active site.	500	510	IPR023828	-
	Vifa1g01992	749	Gene3D	-	302	439	-	-
	Vifa1g01992	749	CDD	Peptidases_S8_3	80	535	IPR034197	-
	Vifa1g01992	749	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	1	78	IPR037045	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01992	Vifa-Chr1	318792689	318796832	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01992	1	707	Subtilisin-like Serine Gene Family	AT5G59100	45.354	0.0	606

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01992	-		-	cam:101506276	967.222

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