Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01992 ATGCAGACTTATATTATCTATACGGGTAATACCATAAACAATGAAACATCTCTATTGCTTCACTACAAAAGTTTGCTTCACCAAGTTATAAAAAGACACCAGCCAAAAACAATACTTCAATACTACAAGAAGAGTTTCGGCGGTTTTGTAGCCAAGCTTACCAAGGAAGAAGCCAACAAAATGGCTGGACTCAAAGGAGTGGTGTCTGTTTTTCTTAATCAAAAGAGAGACATCCTTACCACCAAGTCATGGGACTTTGTTGGTCTTACACAATATGTTGAAAGAAAATATTATGAAAGTGATGTCATTGTCGGGGTTATTGATACAGGAATTTGGCCGGAATCTTCTAGTTTCGGTGATAAAGGTTTTGGTCCGCTACCTACCAAATGGAACGGCAGTTGCATCGCTTTTAATTTCACTTGCAACAGAAAAATCATTGGAGCTAAGTATTACTTATCAACTTCAAATGAACCGTTGAGCCAAGCAGATTTTGAATCTCCAAGAGATTCAAAGGGGCATGGAACTCATACAGCATCAACTGCAGCTGGGAACCCAATTACCATAGCAAGCATGCTAGGACTTGCACAAGGAACAGCAAGAGGTGCAGTCCCGTCTGCACGCATTTCTGTATACAAAGTTTGCTGGTCTACTGGATGCTTTGATGAAAGTATTCTTGCCGCATTTGACGAAGCAATTCTTGATGGGGTTGATATATTATCAGTATCACTTGGATCTGATTCAATAGACAACAGCAATCATTTTAAGGATGCAATTTCTATTGGAGCATTCCATGCAATGCGTCAAGGAGTACTTACGGTAGTGGCAGGAGGAAACTTCGGTCCACGCCCTGCATCCTTACATAATCTGTCACCATGGGCGATTGTTGTTGGTGCTAGTACTTTAGATAGAAGATTTATCACCACGGTCAAATTAGGAGACAATAGAACATATGAGGGTGTCTCACTTAATGCATTTGATCTTGAGGAAACATTATACCCTATAATTTTCGGAGGAGATGCATCAAACACAATATTAGACGTGTTTCGACGTAAATCCAGGTTTTGTTTAAACAACACCTTAGATGTAAAACTGGTGAAGGGTAAAATTGTTTTATGTGAAGGAAAGGAAGGAGTTGAAGAAGCCTTCAGAGTGGGTGCTATTGGTATCTTGATGTATGGTCCCACTTTACCAGAAAAGGCACTGTCTTATCCCTTACCTGCATGCTTTCTTCAAACCAAAGATGTCACTGGTATATTTAAATACATTAGTTCCACAAGGAATCCAGTTGCCACAATATTGAAGACCTATGAGTTAAACGATACGTTGGCACCTGTGGTTGCCTCTTTCTCATCTAGGGGTCCAAACACTGCTATATCTGAGATATTGAAGCCCGATTTAACTGCTCCAGGCATAAATATTTTAGCTAGTTGGCCTTCAAATCTTCCTATCTCGGATATTCTTGGCGAGACTAGAAAATCGGAGTTTAATATTAAATCAGGAACATCAATGTCTTGTCCACATGTATCTGGGGCAGCAGCGTACGTCAAGTCATTTCATCCTACATGGTCGCCTGCTGCTATCCGCTCGGCTTTGATGACAACTGCTAAAAAGATGAGTCCTGTTAATAATAGAGACGCGGAATTTGGTTATGGAGCCGGGGAAGTTGATCCAGTTAAAGCATTACATCCTGGTTTAGTATATGATGCTGATGAAGAGGATTATATTAAACTTTTATGTGGCCATGGCTTCAATACAACCGCTGCTCTACAATTAATCACGGGAGATAATAGCAGTTGCTCGGAAATAACACCAGGATCAGCAAGAGACTTGAACTATCCATCCTTTGCTTTAAAAGCTGCACATCCTAAACAACATGTCAGTGGAAGATTTCATAGAATTGTCACCAACGTTGGAACACCATTCTCTACATATAGAGCAATTGTGACAGCTCCAAGAGGATTACATATTTATGTGATACCTAGTGTTTTGTCATTCACTTCACTAGGAGAAAACCATACATATGTTGTCATTGTTGATGGAGTTTTGAAGAAATCAATGGTATCAGCTTCTCTGACTTGGGATGATGGATATTTCAATGTTAGAAGTCCCATTGTTATTTTCGACGAACGAGCCGAGAGGGTTGCAACATCTTCAACTTTAAGAAATGTTGTTATTATTACCGTTGTTGTTATTTTTTTTAGTTTTGCTATTATTATTATTAGATATAAGGAATTGTGTATTTTTCTATAA 2250 0.3916 MQTYIIYTGNTINNETSLLLHYKSLLHQVIKRHQPKTILQYYKKSFGGFVAKLTKEEANKMAGLKGVVSVFLNQKRDILTTKSWDFVGLTQYVERKYYESDVIVGVIDTGIWPESSSFGDKGFGPLPTKWNGSCIAFNFTCNRKIIGAKYYLSTSNEPLSQADFESPRDSKGHGTHTASTAAGNPITIASMLGLAQGTARGAVPSARISVYKVCWSTGCFDESILAAFDEAILDGVDILSVSLGSDSIDNSNHFKDAISIGAFHAMRQGVLTVVAGGNFGPRPASLHNLSPWAIVVGASTLDRRFITTVKLGDNRTYEGVSLNAFDLEETLYPIIFGGDASNTILDVFRRKSRFCLNNTLDVKLVKGKIVLCEGKEGVEEAFRVGAIGILMYGPTLPEKALSYPLPACFLQTKDVTGIFKYISSTRNPVATILKTYELNDTLAPVVASFSSRGPNTAISEILKPDLTAPGINILASWPSNLPISDILGETRKSEFNIKSGTSMSCPHVSGAAAYVKSFHPTWSPAAIRSALMTTAKKMSPVNNRDAEFGYGAGEVDPVKALHPGLVYDADEEDYIKLLCGHGFNTTAALQLITGDNSSCSEITPGSARDLNYPSFALKAAHPKQHVSGRFHRIVTNVGTPFSTYRAIVTAPRGLHIYVIPSVLSFTSLGENHTYVVIVDGVLKKSMVSASLTWDDGYFNVRSPIVIFDERAERVATSSTLRNVVIITVVVIFFSFAIIIIRYKELCIFL 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01992 749 Pfam Fibronectin type-III domain 609 706 IPR041469 -
Vifa1g01992 749 Pfam Peptidase inhibitor I9 3 77 IPR010259 -
Vifa1g01992 749 ProSiteProfiles Serine proteases, subtilase domain profile. 83 561 - -
Vifa1g01992 749 Gene3D Peptidase S8/S53 domain 101 574 IPR036852 GO:0004252|GO:0006508
Vifa1g01992 749 Gene3D - 578 708 - -
Vifa1g01992 749 FunFam Subtilisin-like protease SBT1.5 101 316 - -
Vifa1g01992 749 ProSitePatterns Serine proteases, subtilase family, serine active site. 500 510 IPR023828 -
Vifa1g01992 749 Gene3D - 302 439 - -
Vifa1g01992 749 CDD Peptidases_S8_3 80 535 IPR034197 -
Vifa1g01992 749 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 78 IPR037045 -
Vifa1g01992 749 Pfam Subtilase family 100 551 IPR000209 GO:0006508|GO:0008236
Vifa1g01992 749 PRINTS Subtilisin serine protease family (S8) signature 499 515 IPR015500 -
Vifa1g01992 749 PRINTS Subtilisin serine protease family (S8) signature 169 182 IPR015500 -
Vifa1g01992 749 PRINTS Subtilisin serine protease family (S8) signature 99 118 IPR015500 -
Vifa1g01992 749 MobiDBLite consensus disorder prediction 161 181 - -
Vifa1g01992 749 SUPERFAMILY Subtilisin-like 84 562 IPR036852 GO:0004252|GO:0006508
Vifa1g01992 749 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 705 IPR045051 -
Vifa1g01992 749 CDD PA_subtilisin_like 308 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01992 Vifa-Chr1 318792689 318796832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01992 1 707 Subtilisin-like Serine Gene Family AT5G59100 45.354 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01992 - - cam:101506276 967.222