Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01986 ATGAAGGCCAGGTCTTATAGTGGTGTTTTGGTTCTCATTGTTTGTCTTATTTCACTTTTAGTGAAATATCACTCATATTTTTCAGACGAAGAAGAAAAGACTTATATTATCTATACGGGTAATACCATAAACAATGAAACATCTCTATTGCTTCACTACAAAAGTTTGCTTCACCAAGTTATAAAAAGACACCAGCCAAAAACAATACTTCAATACTACAAGAAGAGTTTCGGCGGTTTTGTAGCCAAGCTTACCAAGGAAGAAGCCAACAAAATGGCTGGACTCAAAGGAGTGGTGTCTGTTTTTCTTAATCAAAAGAGAGACATCCTTACCACCAAGTCATGGGACTTTGTTGGTCTTACACAATATGTTGAAAGAAAATATTATGAAAGTGATGTCATTGTCGGGGTTATTGATACAGGAATTTGGCCGGAATCTTCTAGTTTCGGTGATAAAGGTTTTGGTCCGCTACCTACCAAATGGAACGGCAGTTGCATCGCTTTTAATTTCACTTGCAACAGAAAAATCATTGGAGCTAAGTATTACTTATCAACTTCAAATGAACCGTTGAGCCAAGCAGATTTTGAATCTCCAAGAGATTCAAAGGGACATGGAACTCATACAGCATCAACTGCAGCTGGGAACCCAGTTACCATAGCAAGCATGCTAGGACTTGCACAAGGAACAACAAGATTTGCAATCCCGTCTGCACGCACTTTTGTATACAAAGTTTGCTGGTCTACTGGATGCTTTGATGAAAGTATTCTTGCCGCATTTGACGAAGCAATTCTTGATGGGGTTGATATATTATCAGTATCACTTGGATCTGATTCAATAGACAACAACAATCATTTTAAGGATGCAATTTCTATTGGAGCATTCCATGCAATGCGTCAAGGAGTACTTACGGTAGTGGCAGGAGGAAACTTCGGTCCACGCCCTGCATCCTTACATAATCTGTCACCATGGGCGATTGTTGTTGGTGCTAGTACGTTAGATAGAAGATTTATCACCGCGGTCAAATTAGGAGAGAATAGAACATATGAGGGTGTCTCACTAAATGCATTTGATCTGGAGGAAACATTATACCCTATAATTTTCGGAGGAGATGCATCAAACACAATATTAGACGTGTTTCGACGTAAATCCAGGTTTTGTTTAAACAACACCTTAGATGTAAGACTGGTGAAGGGTAAAATAGTTTTATGTGAAGGAAAGGAAGGAGTTGAAGAAGCCTTTAGAGTGGGTGCTATTGGTATCTTGATGTATGGTCCCACTTTACCAGAAAAGGCACTGTCTTATCCCTTACCTGCATGCTTTCTTCAAACCAAAGATGTCACTGGTATATTTAAATACATTAGTTCCACAAGGAATCCAGTTGCCACAATATTGAAGACCTATGAGTTAAAAGATACGTTGGCACCTGTGGTTGCCTCTTTCTCATCTAGGGGTCCAAACACTGCTATATCTGAGATATTGAAGCCCGATTTAACTGCTCCAGGCATAAATATTTTAGCTAGTTGGCCTTCAAATCTTCCTATCTCGGATATTCTTGGCGAGACTAGAAAATCGGAGTTTAATATTAAATCAGGAACATCAATGTCTTGTCCACATGTATCTGGGGCAGCAGCGTACGTCAAGTCATTTCATCCTACATGGTCGCCTGCTGCTATCCGCTCGGCTTTGATGACAACTGCTAAAAAGATGAGTCCTGTTAATAATAGAGACGCGGAATTTGGTTATGGAGCCGGGGAAGTTGATCCAGTTAAAGCATTACATCCTGGTTTAGTATATGATGCTGATGAAGAGGATTATATTAAACTTTTATGTGGCCATGGCTTCAATACAACCGCTGCTCTACAATTAATCACGGGAGATAATAGCAGTTGCTCGGAAATAACATCAGGATCAGCAAGAGACTTGAACTATCCATCCTTTGCTTTAAAAGCTGCACATCCTAAACAACATGTCAGTGGAAGATTTCATAGAATTGTCACCAACGTTGGAACACCATTCTCTACATATAGAGCAATTGTGACAGCTCCAAGAGGATTACATATTTATGTGATACCTAGTGTTTTGTCATTCACTTCACTAGGAGAAAACCATACCTATGTTGTCATTGTTGATGGAGTTTTGAAGAAATCAATGGTATCAGCTTCTCTGACTTGGGATGATGGATATTTCAATGTTAGAAGTCCCATTGTTATTTTCGACGAACGAGCCGAGAGGGTTGCAACATCTTCAACTTTAAGAAATGTTGTTATTATTACCGTTGTTGTTATTTTTTTTAGTTTTGCTATTATTATTATCAGATATAAGGAATTGTGTATTTTTCTATAA 2343 0.388 MKARSYSGVLVLIVCLISLLVKYHSYFSDEEEKTYIIYTGNTINNETSLLLHYKSLLHQVIKRHQPKTILQYYKKSFGGFVAKLTKEEANKMAGLKGVVSVFLNQKRDILTTKSWDFVGLTQYVERKYYESDVIVGVIDTGIWPESSSFGDKGFGPLPTKWNGSCIAFNFTCNRKIIGAKYYLSTSNEPLSQADFESPRDSKGHGTHTASTAAGNPVTIASMLGLAQGTTRFAIPSARTFVYKVCWSTGCFDESILAAFDEAILDGVDILSVSLGSDSIDNNNHFKDAISIGAFHAMRQGVLTVVAGGNFGPRPASLHNLSPWAIVVGASTLDRRFITAVKLGENRTYEGVSLNAFDLEETLYPIIFGGDASNTILDVFRRKSRFCLNNTLDVRLVKGKIVLCEGKEGVEEAFRVGAIGILMYGPTLPEKALSYPLPACFLQTKDVTGIFKYISSTRNPVATILKTYELKDTLAPVVASFSSRGPNTAISEILKPDLTAPGINILASWPSNLPISDILGETRKSEFNIKSGTSMSCPHVSGAAAYVKSFHPTWSPAAIRSALMTTAKKMSPVNNRDAEFGYGAGEVDPVKALHPGLVYDADEEDYIKLLCGHGFNTTAALQLITGDNSSCSEITSGSARDLNYPSFALKAAHPKQHVSGRFHRIVTNVGTPFSTYRAIVTAPRGLHIYVIPSVLSFTSLGENHTYVVIVDGVLKKSMVSASLTWDDGYFNVRSPIVIFDERAERVATSSTLRNVVIITVVVIFFSFAIIIIRYKELCIFL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01986 780 Gene3D Peptidase S8/S53 domain 132 605 IPR036852 GO:0004252|GO:0006508
Vifa1g01986 780 MobiDBLite consensus disorder prediction 192 212 - -
Vifa1g01986 780 Pfam Subtilase family 131 582 IPR000209 GO:0006508|GO:0008236
Vifa1g01986 780 ProSitePatterns Serine proteases, subtilase family, serine active site. 531 541 IPR023828 -
Vifa1g01986 780 FunFam Subtilisin-like protease SBT1.5 132 347 - -
Vifa1g01986 780 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 109 IPR037045 -
Vifa1g01986 780 CDD PA_subtilisin_like 340 463 - -
Vifa1g01986 780 Gene3D - 333 470 - -
Vifa1g01986 780 Pfam Peptidase inhibitor I9 34 108 IPR010259 -
Vifa1g01986 780 Pfam Fibronectin type-III domain 640 737 IPR041469 -
Vifa1g01986 780 Gene3D - 609 739 - -
Vifa1g01986 780 ProSiteProfiles Serine proteases, subtilase domain profile. 114 592 - -
Vifa1g01986 780 CDD Peptidases_S8_3 111 566 IPR034197 -
Vifa1g01986 780 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 64 736 IPR045051 -
Vifa1g01986 780 PRINTS Subtilisin serine protease family (S8) signature 530 546 IPR015500 -
Vifa1g01986 780 PRINTS Subtilisin serine protease family (S8) signature 130 149 IPR015500 -
Vifa1g01986 780 PRINTS Subtilisin serine protease family (S8) signature 200 213 IPR015500 -
Vifa1g01986 780 SUPERFAMILY Subtilisin-like 115 593 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01986 Vifa-Chr1 318467066 318471506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01986 31 738 Subtilisin-like Serine Gene Family AT5G59100 44.460 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01986 - - cam:101506276 972.615