Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01985 ATGAAGGGTAGGTCTTATATTGGTGTTTTGGTTCTCATTGTTTGTCTTAATTCACTTTTAGTGAAATATCACTCATATTTTTCAGACGAAGAAGATAAGAGAAACAATGAAACATCTCTATTACTTCACTACAAAAGTTTGCTTCAGCAAGTTACAAAAAGACACCTGCCAAAAACAATACTTCAATACTACAAGAAGAGTTTCAGCGATTTTGTAGCCAAGCTTACGAAAGAAGAAGCCAACAAAATGGCCGGACTCAAAGGAGTGGTGTCTGTTTTTCTTAATCAAAAGAGAATTTGGCCGGAATCTTCTAGTTTCGATGATAAAGGTTTTGGTCCGCTACGTACCAAATGGAACGACAGTTGCATCGCTTTTAATTTTTCTTGCAACAGAAAAATCATTGGAGCTAAGTATTACTTATCAACTTCAAATGAACCGTTGAGCCAAGCAGATTTTGAATCTCCAAGAGATTCAAAGGGACATGGAACTCATACAGCATCAACTGCTGCAGTTGGGAACCCAGTTACCATAGCAAGCATGCTAGGACTTGCACAAGGAACAACAAGAGTTGCAATCCCGTCTGTACGCACTTTCGTATACAAAGTTTGCTGGTCTACTGGATGCTTTGATGAAAGTATTCATGCCGCATTTGACGAAGCAGTTCTTGATGGGGTTGATATATTATCAGTATCACTTAGATCTGATTCAATAGACAACACCAATCATTTTAAGGATGTAATTTCTATTGGAGCATTCCATGCAATGCGTCAAGGAGTACTTACGGTAGTGGCAGGAGGAAACTTCGGTCCACGCCCTGCATCCTTACATAATCTGTCACCATGGACGATTGTTGTTGGTGCTAGTACGTTAGATAGAAGATTTATCACCGCGGTCAAATTAGGAGACAATAGAACATATGAGGGTGTCTCACTAAATGCATTTGATCTTGAGGAAACATTATACCCTATAATATTCGGAGAAGATGCATCAAACACAATATTAGACGTGTTTCGACGTAAATCCAGGTTTTGGAAGTTAAACAACACCTTAGATGTAAGACTGGTGAAGGGTAAAATAGTTTTATGTGAAGGAAAGGAAGGAGTTGAAGAAGCCTTCATAGTGGGTGCTATTGGTATCTTGATGTATGGTCCCACTTTACCAGAAAAGGCACTGTCTTATCCCTTACCTGCATGCTTTCTTCAAACCAAAGATGTCACCGGTATATTTAAATACATTAGTTCGACAAGGAATCCAGTTGCCACAATATTGAAGACCTATGAGTTAAACGATACGTTGGCACCTGTGCCCGATTTAATTGCTCCAGGCGTAAATATTTTATCTAGTTGGCCTTCAAATCTCCCTATCTCGGATATTCTTGGCGAGAATAGAAAATCGGAGTTTAATATTAAATCAGGAACATCAATGTCTTGTCCACATGTATCTGGAGCAGCAACGTACGTCAAGTCATTTCATCCTACATGGTCGCTTGCTGCTAGCCGCTCGGCTTTAATGACAACTGCTAAAAAGATGAGTCCTGTTAATAATAGAGATGCGGAATTTGGTTATGGAGCGGGGGAAGTTGATCCAGTTAAAGCATTACATCCTGGTTTAGTATATGATGCTGATGAAGAGGATTATATTAAACTTTTATGTGGCCATGGCTTCAATACAACCGCTGCTCTACAATTAATCACGGGAGATAATAGCAGTTGCTCGGAAATAACACCAGGATCAGCAAGAGACTTGAACTATCCATCCTTTGCTTTAAAAGCTGCACATCCTAAACAACATGTCAGTGGAAGATTTCATAGAATTGTCACCAACGTTGGAACACCATTCTCTACATATAGAGCAATTGTGACAGCTCCAAGAGGATTACATATTTATGTGATACCTAGTGTTTTGTCATTCACTTCACTAGGAGAAAACCATACATATGTTGTCATTGTTGATGGAGTTTTGAAGAAATCAATGGTATCAGCTTCTCTGACTTGGGATGATGGATATTTCAATGTTAGAAGTCCCATTGTTATTTTCGACGAACGAGCCGAGAGGGTTGCAACATCTTCAACTTTAAGAAATGTTGTTATTATTATCGTTGTTGTTATTTTTTTTAGTTTTGCTATTATTATTATTAGATATAAGGAATTGTGTATTTTTCTATAA 2166 0.3832 MKGRSYIGVLVLIVCLNSLLVKYHSYFSDEEDKRNNETSLLLHYKSLLQQVTKRHLPKTILQYYKKSFSDFVAKLTKEEANKMAGLKGVVSVFLNQKRIWPESSSFDDKGFGPLRTKWNDSCIAFNFSCNRKIIGAKYYLSTSNEPLSQADFESPRDSKGHGTHTASTAAVGNPVTIASMLGLAQGTTRVAIPSVRTFVYKVCWSTGCFDESIHAAFDEAVLDGVDILSVSLRSDSIDNTNHFKDVISIGAFHAMRQGVLTVVAGGNFGPRPASLHNLSPWTIVVGASTLDRRFITAVKLGDNRTYEGVSLNAFDLEETLYPIIFGEDASNTILDVFRRKSRFWKLNNTLDVRLVKGKIVLCEGKEGVEEAFIVGAIGILMYGPTLPEKALSYPLPACFLQTKDVTGIFKYISSTRNPVATILKTYELNDTLAPVPDLIAPGVNILSSWPSNLPISDILGENRKSEFNIKSGTSMSCPHVSGAATYVKSFHPTWSLAASRSALMTTAKKMSPVNNRDAEFGYGAGEVDPVKALHPGLVYDADEEDYIKLLCGHGFNTTAALQLITGDNSSCSEITPGSARDLNYPSFALKAAHPKQHVSGRFHRIVTNVGTPFSTYRAIVTAPRGLHIYVIPSVLSFTSLGENHTYVVIVDGVLKKSMVSASLTWDDGYFNVRSPIVIFDERAERVATSSTLRNVVIIIVVVIFFSFAIIIIRYKELCIFL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01985 721 Gene3D - 291 429 - -
Vifa1g01985 721 Pfam Fibronectin type-III domain 581 678 IPR041469 -
Vifa1g01985 721 SUPERFAMILY Subtilisin-like 99 534 IPR036852 GO:0004252|GO:0006508
Vifa1g01985 721 ProSiteProfiles Serine proteases, subtilase domain profile. 1 533 - -
Vifa1g01985 721 Gene3D - 550 680 - -
Vifa1g01985 721 CDD PA_subtilisin_like 298 422 - -
Vifa1g01985 721 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 55 677 IPR045051 -
Vifa1g01985 721 Pfam Subtilase family 136 523 IPR000209 GO:0006508|GO:0008236
Vifa1g01985 721 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 98 IPR037045 -
Vifa1g01985 721 ProSitePatterns Serine proteases, subtilase family, serine active site. 472 482 IPR023828 -
Vifa1g01985 721 PRINTS Subtilisin serine protease family (S8) signature 471 487 IPR015500 -
Vifa1g01985 721 PRINTS Subtilisin serine protease family (S8) signature 157 170 IPR015500 -
Vifa1g01985 721 Pfam Peptidase inhibitor I9 26 98 IPR010259 -
Vifa1g01985 721 Gene3D Peptidase S8/S53 domain 99 546 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01985 Vifa-Chr1 318407417 318411459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01985 37 679 Subtilisin-like Serine Gene Family AT5G59100 39.407 1.08e-156 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01985 - - cam:101506276 803.897