LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g01984	ATGAAGGGTAGGTCTTATATTGGTGTTTTGGTTCTCATTGTTTGTCTTAATTCACTTTTAGTGAAATATCACTCATATTTTTCAGACGAAGAAGATAAGATTTATATTATCTATACGGACAATACAAGAAACAATGAAACATCTCTATTACTTCACTACAAAAGTTTGCTTCAGCAAGTTACAAAAAGACACCTGCCAAAAACAATACTTCAATACTACAAGAAGAGTTTCAGCTGTTTTGTAGCCAAGCTTACGAAAGAAGAAGCCAACAAAATGGCCGGACTCAAAGGAGTGGTGTCTGTTTTTCTTAATCAAAAGAGTAACATCCTTACCACCAAGTCATGGGACTTTATTGGTCTTACACAATATGTTGAAAGAGAGTATTATGAAAGTGATGTCGTTGTCGGGGTTATTGATTCAGGAATTTGGCCGGAATCTTCTAGTTTCGATGATAAAGGTTTTGGTCCGCTACGTACCAAATGGAACGACAGTTGCATCGCTTATAATTTTTCTTGCAACAGAAAAATCATTGGAGCTAAGTATTACTTATCAACTTCAAATGAACCGTTGAGCCAAGCAGATTTTGAATCTCCAAGAGATTCAAAGGGACATGGAACTCATACAGCATCAACTGCTGCAGTTGGGAACCCAGTTACCATAGCAAGCATGCTAGGACTTGCACAAGGAACAACAAGAGTTGCAATCCCGTCTGTACGCACTTTCGTATACAAAGTTTGCTGGTCTACTGGATGCTTTGATGAAAGTATTCATGCCGCATTTGACGAAGCAGTTCTTGATGGGGTTGATATATTATCAGTATCACTTAGATCTGATTCAATAGACAACACCAATCATTTTAAGGATGTAATTTCTATTGGAGCATTCCATGCAATGCGTCAAGGAGTACTTACGGTAGTGGCAGGAGGAAACTTCGGTCCACGCCCTGCATCCTTACATAATCTGTCACCATGGACGATTGTTGTTGGTGCTAGTACGTTAGATAGAAGATTTATCACCGCGGTCAAATTAGGAGACAATAGAACATATGAGGGTGTCTCACTAAATGCATTTGATCTTGAGGAAACATTATACCCTATAATATTCGAAGGAGATGCATCAAACACAATATTAGACGTGTTTCGACGTAAATCCAGGTTTTGGAAGTTAAACAACACCTTAGATGTAAGACTGGTGAAGGGTAAAATTGTTTTATGTGAAGGAAAGGAAGGAGTTGAAGAAGCCTTCAGAGTGGGTGCTATTGGTATCTTGATGTATGGTCCCACTTTACCAGAAAAGGCACTGTCTTATCCCTTACCTGCATGCTTTCTTCAAACCAAAGATGTCATCGGTATATTTAAATACATTAGTTCCACAAGGAATCCAGTTGCCACAATATTGAAGACCTATGAGTTAAACGATAAGTTGGCACCTGTGGTTGCCTCTTTCTCATCTAGGGGTCCAAACACTGCTATATCTGAGATATTGAAGCCCGATTTAACTGCTCACGGCATAAATATTTTAGCTAGTTGGCCTTCAAATCTTCCTATCTTGGATATTCTTGGCGAGACTAGAAAATCGGAGTTTAATATTAAATCAGGAACATCAATGTCTTGTCCGCATGAATCTGGGGCAGCAGCATACGTCAAGTCATTTCACCTTACATGGTCCCCTGCTGCTATCCTCTCGGCTTTAATGACAACTGCTAAAAAGATGAGTCCTGAAAATAATAGAGACGCGGAATTTGGTTATGGAGCCGGGGAAGTTGATCCAGATAAAGCTTTGCATCCTGGTTTAGTATATGATGCTGATGGGTTCCTTACAACCGCTGCTCTACAATTAATCACGAGAGATAATAGCAGTTGCTCGGAAATAACACCTGCATTAGCAAGAGATTTGAACTATCCATCCTTTGCTTTAAAAGCCTCACATTCTAAACAACATGTCAGTGGAAGATTTCATAGAACTGTCACCAATGTTGGAACACCATTCTCTACGTATAGAGCAATTGTGACACCTCCAAAAGGATTACATATTTATGTGATACCTATTGTTTTGTCATTCACTTCACTAGGCGAAAACCATACATATGTTGTCATTGTTGATGGAGTTTTGAACAAATCAATGGAATCAGCTTCTCTGACTTGGGATGATGGATATTTCAAAGTTAGAAGTCCGATTGTTGTTTTCCATGAACGAGCTGAGAGGGTTGCAACATCTTCAACTTTAACAAATTTACGGATTTATACTTAA	2250	0.3889	MKGRSYIGVLVLIVCLNSLLVKYHSYFSDEEDKIYIIYTDNTRNNETSLLLHYKSLLQQVTKRHLPKTILQYYKKSFSCFVAKLTKEEANKMAGLKGVVSVFLNQKSNILTTKSWDFIGLTQYVEREYYESDVVVGVIDSGIWPESSSFDDKGFGPLRTKWNDSCIAYNFSCNRKIIGAKYYLSTSNEPLSQADFESPRDSKGHGTHTASTAAVGNPVTIASMLGLAQGTTRVAIPSVRTFVYKVCWSTGCFDESIHAAFDEAVLDGVDILSVSLRSDSIDNTNHFKDVISIGAFHAMRQGVLTVVAGGNFGPRPASLHNLSPWTIVVGASTLDRRFITAVKLGDNRTYEGVSLNAFDLEETLYPIIFEGDASNTILDVFRRKSRFWKLNNTLDVRLVKGKIVLCEGKEGVEEAFRVGAIGILMYGPTLPEKALSYPLPACFLQTKDVIGIFKYISSTRNPVATILKTYELNDKLAPVVASFSSRGPNTAISEILKPDLTAHGINILASWPSNLPILDILGETRKSEFNIKSGTSMSCPHESGAAAYVKSFHLTWSPAAILSALMTTAKKMSPENNRDAEFGYGAGEVDPDKALHPGLVYDADGFLTTAALQLITRDNSSCSEITPALARDLNYPSFALKASHSKQHVSGRFHRTVTNVGTPFSTYRAIVTPPKGLHIYVIPIVLSFTSLGENHTYVVIVDGVLNKSMESASLTWDDGYFKVRSPIVVFHERAERVATSSTLTNLRIYT	749

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g01984	749	Pfam	Fibronectin type-III domain	631	728	IPR041469	-
	Vifa1g01984	749	Gene3D	-	605	730	-	-
	Vifa1g01984	749	ProSitePatterns	Serine proteases, subtilase family, serine active site.	533	543	IPR023828	-
	Vifa1g01984	749	Pfam	Peptidase inhibitor I9	35	106	IPR010259	-
	Vifa1g01984	749	SUPERFAMILY	Subtilisin-like	110	598	IPR036852	GO:0004252\|GO:0006508
	Vifa1g01984	749	CDD	PA_subtilisin_like	341	465	-	-
	Vifa1g01984	749	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	61	728	IPR045051	-
	Vifa1g01984	749	CDD	Peptidases_S8_3	111	568	IPR034197	-
	Vifa1g01984	749	ProSiteProfiles	Serine proteases, subtilase domain profile.	114	594	-	-
	Vifa1g01984	749	PRINTS	Subtilisin serine protease family (S8) signature	532	548	IPR015500	-
	Vifa1g01984	749	PRINTS	Subtilisin serine protease family (S8) signature	200	213	IPR015500	-
	Vifa1g01984	749	PRINTS	Subtilisin serine protease family (S8) signature	130	149	IPR015500	-
	Vifa1g01984	749	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	22	109	IPR037045	-
	Vifa1g01984	749	Gene3D	Peptidase S8/S53 domain	132	603	IPR036852	GO:0004252\|GO:0006508
	Vifa1g01984	749	Pfam	Subtilase family	131	584	IPR000209	GO:0006508\|GO:0008236
	Vifa1g01984	749	Gene3D	-	334	472	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g01984	Vifa-Chr1	318397193	318401389	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g01984	31	729	Subtilisin-like Serine Gene Family	AT5G59100	43.370	0.0	544

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g01984	-		-	cam:101506276	903.664