Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01982 ATGAAGGGTAGGTCTTATATTGGTGTTTTGGTTCTCATTGTTTGTCTTAATTCACTTTTAGTGAAATATCACTCATATTTTTCAGACGAAGAAGATAAGATTTATATTATCTATACGGACAATACAAGAAACAATGAAACATCTCTATTACTTCACTACAAAAGTTTGCTTCAGCAAGTTACAAAAAGACACCTGCCAAAAACAATACTTCAATACTACAAGAAGAGTTTCAGCGGTTTTGTAGCCAAGCTTACGAAAGAAGAAGCCAACAAAATGGCTGGACTCAAAGGAGTGGTGTCTGTTTTTCTTAATCAAAAGAGAATTTGGCCGGAATCTTCTAGTTTCGATGATAAAGGTTTTGGTCCGCTACGTACCAAATGGAACGACAGTTGCATCGCTTTTAATTTTTCTTGCAACAGAAAAATCATTGGAGCTAAGTATTACTTATCAACTTCAAATGAACCGTTGAGCCAAGCAGATTTTGAATCTCCAAGAGATTCAAAGGGACATGGAACTCATACAGCATCAACTGCTGCAGCTGGGAACCCAGTTACCATAGCAAGCATGCTAGGACTTGCACAAGGAACAACAAGAGTTGCAATCCCGTCTGTACGCACTTTCGTATACAAAGTTTGCTGGTCTACTGGATGCTTTGATGAAAGTATTCATGCCGCATTTGACGAAGCAGTTCTTGATGGGGTTGATATATTATCAGTATCACTTAGATCTGATTCAATAGACAACACCAATCATTTTAAGGATGTAATTTCTATTGGAGCATTCCATGCAATGCGTCAAGGAGTACTTACGGTAGTGGCAGGAGGAAACTTCAGTCCACGCCCTGCATCCTTACATAATCTGTCACCATGGACGATTGTTGTTGGTGCTAGTACGTTAGATAGAAGATTTATCACCGCGGTCAAATTAGGAGACAATAGAACATATGAGGGTGTCTCACTAAATGCATTTGATCTTGAGGAAACATTATACCCTATAATATTCGGAGGAGATGCATCAAACACAATATTAGACGTGTTTCGACGTAAATCCAGGTTTTGGAAGTTAAACAACACCTTAGATGTAAGACTGGTGAAGGGTAAAATTGTTTTATGTGAAGGAAAGGAAGGAGTTGAAGAAGCCTTCAGAGTGGGTGCTATTGGTATCTTGATGTATGGTCCCACTTTACCAGAAAAGGCACTGTCTTATCCCTTACCTCCATGCTTTCTTCAAACCAAAGATGTAACCGGTATATTTAAATACATTAGTTCCACAAGGAATCCAGTTGCCACAATATTGAAGACCTATGAGTTAAACGATAAGTTGGCACCTGTGGTTGCCTCTTTCTCATCTAGGGGTCCAAACACTGCTATATCTGAGATATTGAAGCCCGATTTAACTGCTCACGGCATAAATATTTTAGCTAGTTGGCCTTCAAATCTTCCTATCTTGGATATTCTTGGCGAGACTAGAAAATCGGAGTTTAATATTAAATCAGGAACATCAATATCTTGTCCGCATGAATCTGGGGCAGCAGCATATGTCAAGTCATTTCACCTTACATGGTCCCCTGCTGCTATCTTCTCGGCTTTAATGACAACTGCTAAAAAGATGAGTCCTGAAAATAATAGAGACGCGGAATTTGGTTATGGAGCCGGGGAAGTTGATCCAGATAAAGCTTTGCATCCTGGTTTAGTATATGATGCTGATGGGTTCCTTACAACCGCTGCTCTACAATTAATCACGAGAGATAATAGCAGTTGCTCGGAAATAACACCTGCATTAGCAAGAGATTTGAACTATCCATCCTTTGCTTTAAAAGCCTCACATTCTAAACAACATGTCAGTGGAAGATTTCATAGAACTGTCACCAATGTTGGAACACCATTCTCTACGTATAGAGCAATTGTGACACCTCCAAAAGGATTACATATTTATGTGATACCTATTGTTTTGTCATTCACTTCACTAGGCGAAAACCATACATATGTTGTCATTGTTGATGGAGTTTTGAACAAATCAATGGAATCAGCTTCTCTGACTTGGGATGATGGATATTTCAAAGTTAGAACTAAAAAGATGAGTCCTGAAAATAATAGAGACGCGGAATTTGGTTATGGAGCCGGGGAAGTTGATCCAGATAAAGCTTTGCATCCTGGTTTAGTATATGATGCTGATGGGTTCCTTACAACCGCTGCTCTACAATTAATCACGAGAGATAATAGCAGTTGCTCGGAAATAACACCTGCATTAGCAAGAGATTTGAACTATCCATCCTTTGCTTTAAAAGCCTCACATTCTAAACACATGTCAGTGGAAGATTTCATAGAACTGTCACCAATGTTGGAACACCATTCTCTACGTATAGAGCAATTGTGA 2376 0.3906 MKGRSYIGVLVLIVCLNSLLVKYHSYFSDEEDKIYIIYTDNTRNNETSLLLHYKSLLQQVTKRHLPKTILQYYKKSFSGFVAKLTKEEANKMAGLKGVVSVFLNQKRIWPESSSFDDKGFGPLRTKWNDSCIAFNFSCNRKIIGAKYYLSTSNEPLSQADFESPRDSKGHGTHTASTAAAGNPVTIASMLGLAQGTTRVAIPSVRTFVYKVCWSTGCFDESIHAAFDEAVLDGVDILSVSLRSDSIDNTNHFKDVISIGAFHAMRQGVLTVVAGGNFSPRPASLHNLSPWTIVVGASTLDRRFITAVKLGDNRTYEGVSLNAFDLEETLYPIIFGGDASNTILDVFRRKSRFWKLNNTLDVRLVKGKIVLCEGKEGVEEAFRVGAIGILMYGPTLPEKALSYPLPPCFLQTKDVTGIFKYISSTRNPVATILKTYELNDKLAPVVASFSSRGPNTAISEILKPDLTAHGINILASWPSNLPILDILGETRKSEFNIKSGTSISCPHESGAAAYVKSFHLTWSPAAIFSALMTTAKKMSPENNRDAEFGYGAGEVDPDKALHPGLVYDADGFLTTAALQLITRDNSSCSEITPALARDLNYPSFALKASHSKQHVSGRFHRTVTNVGTPFSTYRAIVTPPKGLHIYVIPIVLSFTSLGENHTYVVIVDGVLNKSMESASLTWDDGYFKVRTKKMSPENNRDAEFGYGAGEVDPDKALHPGLVYDADGFLTTAALQLITRDNSSCSEITPALARDLNYPSFALKASHSKHMSVEDFIELSPMLEHHSLRIEQL 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01982 791 MobiDBLite consensus disorder prediction 158 177 - -
Vifa1g01982 791 Pfam Subtilase family 145 550 IPR000209 GO:0006508|GO:0008236
Vifa1g01982 791 ProSiteProfiles Serine proteases, subtilase domain profile. 1 560 - -
Vifa1g01982 791 CDD PA_subtilisin_like 307 431 - -
Vifa1g01982 791 Gene3D - 571 694 - -
Vifa1g01982 791 ProSitePatterns Serine proteases, subtilase family, serine active site. 499 509 IPR023828 -
Vifa1g01982 791 Pfam Fibronectin type-III domain 597 690 IPR041469 -
Vifa1g01982 791 Gene3D - 300 438 - -
Vifa1g01982 791 SUPERFAMILY Subtilisin-like 135 564 IPR036852 GO:0004252|GO:0006508
Vifa1g01982 791 Gene3D Peptidase S8/S53 domain 108 569 IPR036852 GO:0004252|GO:0006508
Vifa1g01982 791 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 22 107 IPR037045 -
Vifa1g01982 791 Pfam Peptidase inhibitor I9 35 107 IPR010259 -
Vifa1g01982 791 PRINTS Subtilisin serine protease family (S8) signature 498 514 IPR015500 -
Vifa1g01982 791 PRINTS Subtilisin serine protease family (S8) signature 166 179 IPR015500 -
Vifa1g01982 791 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 61 690 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01982 Vifa-Chr1 318326215 318338630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01982 702 771 Subtilisin-like Serine Gene Family AT5G59100 44.444 2.98e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01982 - - cam:101506276 804.668