Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01980 ATGCTTTTGTTTCTTGCCATTTTTATAAATATACTATTGGATAGAGATTGTCTCACCTCTCAAAGGAGTCTAAGAGCTGCTGTGAAGGGAAACATTGAAAGGAGTCTAAGAGCTGCTGTGAAGGGAACCTTGACAGCCTACCATGTTATTGCAAAGGTGAGCAAGGTTGGTGCTTATTCAAGAATAAAGCAAGAACTAGAGTCAAAGAAACAAGAATTCACCTATGAAGAAGTATTAAGCATTACCAGAAACTTTGAAAAGGTGGGAGGTCAAAAGCAAAGAGTTGCAATTGGAAGAGCAATTTTGAAAGATCCAAAAATATTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCCGAGTGTGCATGTATTGATACTAACTTGTGCATTTGTATGTTCTTTTTAAACCTTGGTGATTTCCTTGTGCAGAAACTAGGGGAAGGTGTGAAAGGGGTGTATATCTCGATAGACGTGGATTGTCTTGATCCTGCATTTGCTCCGGGAGTGTCTCATATTGAACCGGGAGGTCTTTCTTTCCGCGATGTTCTTAACATCCTACACAATCTTCAAGGTGATGTTGTTGCTGGAGACGTCGTTGAACTCAACCCACAACGCGATACTGTTGATGGAATGACTGCTATGGTAGCTGCTAAGTTGGTCAGAGAAATGGCTGCAAAGATTGCAAAATGA 690 0.4072 MLLFLAIFINILLDRDCLTSQRSLRAAVKGNIERSLRAAVKGTLTAYHVIAKVSKVGAYSRIKQELESKKQEFTYEEVLSITRNFEKVGGQKQRVAIGRAILKDPKILLLDEATSALDAECACIDTNLCICMFFLNLGDFLVQKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRDVLNILHNLQGDVVAGDVVELNPQRDTVDGMTAMVAAKLVREMAAKIAK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01980 229 Gene3D - 89 121 IPR027417 -
Vifa1g01980 229 SUPERFAMILY Arginase/deacetylase 139 225 IPR023696 -
Vifa1g01980 229 Pfam Arginase family 143 223 IPR006035 GO:0046872
Vifa1g01980 229 Gene3D Ureohydrolase domain 134 229 - -
Vifa1g01980 229 Pfam ABC transporter 89 115 IPR003439 GO:0005524
Vifa1g01980 229 ProSitePatterns Arginase family signature. 155 176 IPR020855 GO:0016813|GO:0046872
Vifa1g01980 229 PANTHER ARGINASE/AGMATINASE 142 229 IPR006035 GO:0046872
Vifa1g01980 229 ProSiteProfiles Arginase family profile. 139 229 IPR006035 GO:0046872
Vifa1g01980 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 121 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01980 Vifa-Chr1 317915924 317917597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01980 83 121 Calmodulin-binding Proteins AT2G36910 69.231 1.67e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01980 K01476 - gmx:100789799 169.474