Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01978 ATGGCCTCCCCAAAGCTCTTAATAGTTACTCTCTTCTCATTTATTTTAGCATCTCTCATCCAAATATCTTTTGAAGCCGATCCACTTTTCCATTTTTGTTCAAACTCGGGTAACTTCACGGCCAATAGCCCATATGAATCAAATTTAAAAACACTCATCAACTCACTTATCTACAAAACTCCTTCAACCGGTTTTGGCATTGGATCAGCAGGTCTGGTCCAATACCAAAACCAAGAACAAGCATATGGACTTGCTCTTTGTCGTGGTGATGTTTCCGCTTCAGAGTGTAAAACTTGTGTCACCGAGGCACCCAAAGAAATTCAAAATCGTTGTCCATACAACAAAGGCGCGATCATATGGTACGATTATTGTTTTTTAAAATACTTGGATGCAGATTTCATCGGCAAGATTGATAACACCAATGAATTCTACATGTGGAATGTGAATATTGTTGATGACCCTACCACGTTTAATAACAATACTAAAGAGTTATTAAGCCAGCTTGCAGATAAAGCTTCTATCAATCCTAAACTGTATGCAACTGGAGAAGTAAAGCTTGAGAATTCAAAGAAACTTTATGGGTTAACTCAGTGCACTAGAGACCTTTCTAGTGTTGATTGTAAGAAGTGTCTTGATGATGCAATTAATCAACTTCCAAATTGTTGCGATGGTAAAGAAGGAGGTAGAGTTGTTGGAGGAAGCTGTAACTTTCGATATGAGATATACCCATTTGTCAAAGAGTAA 744 0.3777 MASPKLLIVTLFSFILASLIQISFEADPLFHFCSNSGNFTANSPYESNLKTLINSLIYKTPSTGFGIGSAGLVQYQNQEQAYGLALCRGDVSASECKTCVTEAPKEIQNRCPYNKGAIIWYDYCFLKYLDADFIGKIDNTNEFYMWNVNIVDDPTTFNNNTKELLSQLADKASINPKLYATGEVKLENSKKLYGLTQCTRDLSSVDCKKCLDDAINQLPNCCDGKEGGRVVGGSCNFRYEIYPFVKE 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01978 247 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Vifa1g01978 247 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Vifa1g01978 247 Pfam Salt stress response/antifungal 153 241 IPR002902 -
Vifa1g01978 247 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38-RELATED 8 246 - -
Vifa1g01978 247 ProSiteProfiles Gnk2-homologous domain profile. 27 133 IPR002902 -
Vifa1g01978 247 Gene3D - 26 133 IPR038408 -
Vifa1g01978 247 Gene3D - 139 244 IPR038408 -
Vifa1g01978 247 FunFam Cysteine-rich receptor-like protein kinase 10 141 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01978 Vifa-Chr1 317406865 317407608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01978 6 246 Pollen Coat Proteome AT4G20670 38.153 1.66e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01978 - - gmx:100527155 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01978 1 317406865 317407608 Vifa1g01978 1 317406865 317407608 ECH