Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01969 ATGTACATGGATTCCGCAGGTGGTGGTTCCTCTTGTTGGCTCTATGATTATGGCTATGATATCTCTCTCTCTGCTGCTGATTTCATGGCTTCTTCTGATCATCACTCTTCTGCTGTTGATTTCATGGCTTCTTCTGATCACTCTTCTGCTGCTGCTTTCAACTGGTTGCCTCACTCTCAGACTCACATCCTCAACCCTCCTTCCTCCAATATCAGCTTGGAAATGGAATACTCATTAGATTCTACTGTCTTCGAAAATGGCCCTTCAAAGCCTTCAAAGCGCTTGCAAATGGAGTACTCATTAGATTCAACTATACTCGAAAATGTCTCTTCAAAGCGGTTAAGGACAGAATCATATGCTTCTGGCTCGAAGGCAGGTCGCGAGAAAGTGAGAAGGGATAAACTGAATGATAAGTTTCTGGAATTGAGTTCTGTCTTAGAGCCTGACACACTGCCCAAAACAGACAAGGTTACCTTATTAAACGATGCGGTTCGTGTGGTGACTCAATTAAGAAATGAAGCACAGAGGCTCAAGGAAAGGAACGATGAATTACGCGAAAAAGTTAAAGAACTTAAGGCTGAGAAGAATGAGCTTCGTGACGAGAAGAATAAGCTGAAGCTAGACAAAGAAAAGCTGGAGCAACAAGTGAAATTAACAAGTGTACAGTCAAGCTTCCTCTCTAATGCCATGGCTTCTAAAGCACAAACTGCTGGCCACAAGCTGATGCCATTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCACCTGCTACAATTGATACATCACAAGATCATCTCCTTCGACCACCCGTTGCTTAA 825 0.4291 MYMDSAGGGSSCWLYDYGYDISLSAADFMASSDHHSSAVDFMASSDHSSAAAFNWLPHSQTHILNPPSSNISLEMEYSLDSTVFENGPSKPSKRLQMEYSLDSTILENVSSKRLRTESYASGSKAGREKVRRDKLNDKFLELSSVLEPDTLPKTDKVTLLNDAVRVVTQLRNEAQRLKERNDELREKVKELKAEKNELRDEKNKLKLDKEKLEQQVKLTSVQSSFLSNAMASKAQTAGHKLMPFIGYPGISMWQFMSPATIDTSQDHLLRPPVA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01969 274 Coils Coil 160 222 - -
Vifa1g01969 274 Pfam Helix-loop-helix DNA-binding domain 124 170 IPR011598 GO:0046983
Vifa1g01969 274 Gene3D - 123 203 IPR036638 GO:0046983
Vifa1g01969 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Vifa1g01969 274 CDD bHLH_AtILR3_like 124 199 - -
Vifa1g01969 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 186 IPR036638 GO:0046983
Vifa1g01969 274 PANTHER BHLH TRANSCRIPTION FACTOR 41 274 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vifa1g01969 274 SMART finulus 125 176 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01969 Vifa-Chr1 317171724 317173008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01969 104 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51070 61.017 4.27e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g01969 HLH 7.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01969 - - psat:127086780 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01969 1 317171724 317173008 Vifa1g01969 1 317171724 317173008 ECH