Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01962 ATGGCTCCTTCCTCAGATATCAATCATCTTTCTCATCCATGTATATTTGGTGATTATGTTTCTTCACATCCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAAAGGCGGGCCTAATAGAGGAAGGAGCGGTCGTCATCTTCATGATTCTTCGGAGGAAAGTGTGTCTTGGCGTGTTCCATCTCGAGCTTTGGATGATCGCGGTAGAGCTCAAAAGGAGAAAGAGGATTTGGGCCATGCAATGTCACTTTCTTCATCTGAAGATTCGAAGAGACCAAATGGATATAGGTGGGGGGAAGGAAATGGTGAAGATTATGGAAAGGCACTTCATGATAACTTGAACTCATCTGCACACCCTCCTTATGCTCCGGCGCCATTTTATCCGAATGAATATCGAAGAATATGTGGCGGCTGCAGCCAGGAGATAATCTATGGAAACTGTTTAGGTTGCATGGATACTTATTTTCATCCAGACTGCTTTCGATGCCACTCATGTCGCTATCCCATTACCGAGCGCGAGTTTTCTCTGTCAGGGAAGCATCCATATCACAAGTCTTGTTTTAAAGAGTTGACTCACCCGAAATGTGAAGTTTGCTTCCAGTTTATTCCAATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTTTTGGTCTCAAAAGTATTGTCCATGTCATGAATATGATAATACATCTCGTTGTTGTAGTTGTGAAAGATTGGAGCCTCGGAATACGAAATACTATGGACTCGAAGACGGGCGAAGCCTGTGTTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTCTATACCATTCAATCAGAGATTATTATGAAGGAATGCTTATGAGAATAGATCAGCAAGTTCCTATGCTTCTTGTTGAGAGAGAAGCACTTAATGAAGCTATTGTTGGAGAGAAAAATGGATTTCATCATTTGCCAGAAACAAGAGGTTTATGCCTTTCAGAAGAGCAAACTGTCACCAGTATACATAGAAGGCCGAGAATTGGAGGTCATCGATTTATAGGGATGAGAACTCAACATCAAAAGTTGATAAGAAAAAGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTACCAAGGTTACTAACAGGTGCTATACTTGCTCACGAGTTGATGCATGCGTGGTTACGTCTTAAAGGCTACCGCAACCTGAATCCTGAAGTAGAGGAAGGAATTTGTCAGGTTCTTTCATATATGTGGCTTGAGACAGAAGTTATGCCAACAAACTATCAAAACATGCCATCAACATCCACAGCTTCTTCTTCTTCCTCTTCATCATCAAAGAAAGGTGCAAAGTCTCATGTTGAAAACAAATTGGGGGAATTCTTCAAGAATCAAATTGTCAATGATTCTTCCCCAGCTTATGGTGGTGGGTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTCTGCGTAGTACTCTTGAGCATATTCGTTTGACTGGTTTTTTCCCTGTTGTGTAA 1512 0.4114 MAPSSDINHLSHPCIFGDYVSSHPERKSGFMKWLSKLFKGGPNRGRSGRHLHDSSEESVSWRVPSRALDDRGRAQKEKEDLGHAMSLSSSEDSKRPNGYRWGEGNGEDYGKALHDNLNSSAHPPYAPAPFYPNEYRRICGGCSQEIIYGNCLGCMDTYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPCHEYDNTSRCCSCERLEPRNTKYYGLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMLMRIDQQVPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRFIGMRTQHQKLIRKSEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLETEVMPTNYQNMPSTSTASSSSSSSSKKGAKSHVENKLGEFFKNQIVNDSSPAYGGGFRAANEAVNKYGLRSTLEHIRLTGFFPVV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01962 503 MobiDBLite consensus disorder prediction 46 85 - -
Vifa1g01962 503 SMART lim_4 138 190 IPR001781 -
Vifa1g01962 503 MobiDBLite consensus disorder prediction 427 446 - -
Vifa1g01962 503 MobiDBLite consensus disorder prediction 42 100 - -
Vifa1g01962 503 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 164 - -
Vifa1g01962 503 ProSitePatterns LIM zinc-binding domain signature. 139 173 IPR001781 -
Vifa1g01962 503 Pfam Protein DA1 288 497 IPR022087 -
Vifa1g01962 503 FunFam Protein DA1-related 2 128 192 - -
Vifa1g01962 503 Gene3D Cysteine Rich Protein 126 197 - -
Vifa1g01962 503 MobiDBLite consensus disorder prediction 427 447 - -
Vifa1g01962 503 PANTHER PROTEIN DA1-RELATED 2 33 501 IPR045218 -
Vifa1g01962 503 Pfam LIM domain 139 192 IPR001781 -
Vifa1g01962 503 CDD LIM_DA1 139 191 - -
Vifa1g01962 503 ProSiteProfiles LIM domain profile. 137 197 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01962 Vifa-Chr1 314936417 314939257 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g01962 DA1-like 1.8e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01962 - - gmx:100784976 919.457