Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01961 ATGGCTCCTTCCTCAGATATCAATCATCTTTCTCATCCATGTATATTTGGTGATTATGTTTCTTCACATCCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAAAGGCGGGCCTAATAGAGGAAGGAGCGGTCGTCATCTTCATGATTCTTCGGAGGAAAGTGTGTCTTGGCGTGTTCCATCTCGAGCTTTGGATGATCGCGGTAGAGCTCAAAAGGAGAAAGAGGATTTGGGCCATGCAATGTCACTTTCTTCATCTGAAGATTCGAAGAGACCAAATGCTCATCAAGGATATAGGTGGGGGGAAGGAAATGGTGAAGATTATGGAAAGGCACTTCATGATAACTTGAACTCATCTGCACACCCTCCTTATGCTCCGGCGCCATTTTATCCGAATGAATATCGAAGAATATGTGGCGGCTGCAGCCAGGAGATAATCTATGGAAACTGTTTAGGTTGCATGGATACTTATTTTCATCCAGACTGCTTTCGATGCCACTCATGTCGCTATCCCATTACCGAGCGCGAGTTTTCTCTGTCAGGGAAGCATCCATATCACAAGTCTTGTTTTAAAGAGTTGACTCACCCGAAATGTGAAGTTTGCTTCCAGTTTATTCCAATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTTTTGGTCTCAAAAGTATTGTCCATGTCATGAATATGATAATACATCTCGTTGTTGTAGTTGTGAAAGATTGGAGCCTCGGAATACGAAATACTATGGACTCGAAGACGGGCGAAGCCTGTGTTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGATTGTCAGCCTCTATACCATTCAATCAGAGATTATTATGAAGGAATGCTTATGAGAATAGATCAGCAAGTTCCTATGCTTCTTGTTGAGAGAGAAGCACTTAATGAAGCTATTGTTGGAGAGAAAAATGGATTTCATCATTTGCCAGAAACAAGAGGTTTATGCCTTTCAGAAGAGCAAACTGTCACCAGTATACATAGAAGGCCGAGAATTGGAGGTCATCGATTTATAGGGATGAGAACTCAACATCAAAAGTTGATAAGAAAAAGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTACCAAGGTTACTAACAGGTGCTATACTTGCTCACGAGTTGATGCATGCGTGGTTACGTCTTAAAGGCTACCGCAACCTGAATCCTGAAGTAGAGGAAGGAATTTGTCAGGTTCTTTCATATATGTGGCTTGAGACAGAAGTTATGCCAACAAACTATCAAAACATGCCATCAACATCCACAGCTTCTTCTTCTTCCTCTTCATCATCAAAGAAAGGTGCAAAGTCTCATGTTGAAAACAAATTGGGGGAATTCTTCAAGAATCAAATTGTCAATGATTCTTCCCCAGCTTATGGTGGTGGGTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTCTGCGTAGTACTCTTGAGCATATTCGTTTGACTGGTTTTTTCCCTGTTGTGTAA 1521 0.4116 MAPSSDINHLSHPCIFGDYVSSHPERKSGFMKWLSKLFKGGPNRGRSGRHLHDSSEESVSWRVPSRALDDRGRAQKEKEDLGHAMSLSSSEDSKRPNAHQGYRWGEGNGEDYGKALHDNLNSSAHPPYAPAPFYPNEYRRICGGCSQEIIYGNCLGCMDTYFHPDCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPCHEYDNTSRCCSCERLEPRNTKYYGLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMLMRIDQQVPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRFIGMRTQHQKLIRKSEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLETEVMPTNYQNMPSTSTASSSSSSSSKKGAKSHVENKLGEFFKNQIVNDSSPAYGGGFRAANEAVNKYGLRSTLEHIRLTGFFPVV 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01961 506 Gene3D Cysteine Rich Protein 129 200 - -
Vifa1g01961 506 MobiDBLite consensus disorder prediction 46 85 - -
Vifa1g01961 506 CDD LIM_DA1 142 194 - -
Vifa1g01961 506 ProSitePatterns LIM zinc-binding domain signature. 142 176 IPR001781 -
Vifa1g01961 506 FunFam Protein DA1-related 2 131 195 - -
Vifa1g01961 506 ProSiteProfiles LIM domain profile. 140 200 IPR001781 -
Vifa1g01961 506 MobiDBLite consensus disorder prediction 430 450 - -
Vifa1g01961 506 PANTHER PROTEIN DA1-RELATED 2 33 504 IPR045218 -
Vifa1g01961 506 SMART lim_4 141 193 IPR001781 -
Vifa1g01961 506 MobiDBLite consensus disorder prediction 42 104 - -
Vifa1g01961 506 MobiDBLite consensus disorder prediction 430 449 - -
Vifa1g01961 506 Pfam Protein DA1 291 500 IPR022087 -
Vifa1g01961 506 Pfam LIM domain 142 195 IPR001781 -
Vifa1g01961 506 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01961 Vifa-Chr1 314936417 314939257 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g01961 DA1-like 1.8e-97 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01961 - - gmx:100784976 931.398