Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01959 ATGGAATGTAATGAAGAGATGTTGAAGATGATAGTTCCAGAAACACAACTCACCATTGTTGATGTGTTCGGCGACGGAGAGAAACAATACTGTTTTCCGGAAGAGATAGAGACTTTCTACGTGAAACTCACCGACATGTTAAACTCCTCTGGACTCACTCTCATATTCAATGTCCGAGAAACATCCTTAGACTTGTTCAACTTTTACTTGGAGGTCGTTAAAAGAGGAGGTTACAAACAGGTTGGTAAACAAAAGCAATGGGGTGAAGTTGTTTCAGCTCTAAAACTGGAAGGAAACAATGCAAAGCTACCATCTCAGATTAAAAGGCTCTATGCAAATCTTCTATATGAATTTGAGAAAATTTACTTCTATAGGTTTCGTGCAACTCAAACCGCAACTCACACCACCAAAGGGCTTCTACAAGCACCCTCAAATGACAAACAAAAGAAGAAGCCACGCGGTGTTCCAAGGGGGGCAAACGGATACCAAATATTCCTCAAGCACGAATGTGCCCGATTAAAAGCTTGTCGTCAGGACATAGATGGCAAAGCGATCCTGCTCACGGCTGTCGAAGGATGGAAGAATTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGCTAAAGGAAGCTATGGTCATTATTGACAATAATAAGCAGAAGAGCACTCAAGTTCTTTAA 690 0.413 MECNEEMLKMIVPETQLTIVDVFGDGEKQYCFPEEIETFYVKLTDMLNSSGLTLIFNVRETSLDLFNFYLEVVKRGGYKQVGKQKQWGEVVSALKLEGNNAKLPSQIKRLYANLLYEFEKIYFYRFRATQTATHTTKGLLQAPSNDKQKKKPRGVPRGANGYQIFLKHECARLKACRQDIDGKAILLTAVEGWKNLSDIDKQPYVEESKKLKEAMVIIDNNKQKSTQVL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01959 229 SMART hmgende2 154 223 IPR009071 -
Vifa1g01959 229 Gene3D - 27 138 IPR036431 GO:0003677
Vifa1g01959 229 SUPERFAMILY ARID-like 30 124 IPR036431 GO:0003677
Vifa1g01959 229 ProSiteProfiles ARID domain profile. 26 123 IPR001606 GO:0003677
Vifa1g01959 229 CDD ARID 37 119 - -
Vifa1g01959 229 CDD HMG-box_SF 157 213 - -
Vifa1g01959 229 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 141 217 - -
Vifa1g01959 229 SMART ARID_2 30 119 - -
Vifa1g01959 229 Pfam ARID/BRIGHT DNA binding domain 37 119 IPR001606 GO:0003677
Vifa1g01959 229 Gene3D High mobility group box domain 141 227 IPR036910 -
Vifa1g01959 229 SMART bright_3 34 124 IPR001606 GO:0003677
Vifa1g01959 229 MobiDBLite consensus disorder prediction 137 157 - -
Vifa1g01959 229 Pfam HMG (high mobility group) box 156 214 IPR009071 -
Vifa1g01959 229 SUPERFAMILY HMG-box 145 213 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01959 Vifa-Chr1 314868110 314869557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01959 63 148 ARID Transcription Factor Family AT1G76110 30.233 2.33e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa1g01959 ARID 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01959 - - psat:127121142 375.17