Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01958 ATGGAATGTAATGAAGAGATGTTGAAGATGATAGTTCCAGAAACACAACTCACCATTGTTGATGTGTTCGGCGACGGAGAGAAACAATACTGTTTTCCGGAAGAGATAGAGACTTTCTACGTGAAACTCACCGACATGTTAAACTCCTCTGGACTCACTCTCATATTCAATGTCCGAGAAACATCCTTAGACTTGTTCAACTTTTACTTGGAGGTCGTTAAAAGAGGAGGTTACAAACAGGTTGGTAAACAAAAGCAATGGGGTGAAGTTGTTTCAGCTCTAAAACTGGAAGGAAACAATGCAAAGCTACCATCTCAGATTAAAAGGCTCTATGCAAATCTTCTATATGAATTTGAGAAAATTTACTTCTATAGGTTTCGTGCAACTCAAACCGCAACTCACACCACCAAAGCATTACATGAAGGGCTTCTACAAGCACCCTCAAATGACAAACAAAAGAAGAAGCCACGCGGTGTTCCAAGGGGGGCAAACGGATACCAAATATTCCTCAAGCACGAATGTGCCCGATTAAAAGCTTGTCGTCAGGACATAGATGGCAAAGCGATCCTGCTCACGGCTGTCGAAGGATGGAAGAATTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGCTAAAGGAAGCTATGGTCATTATTGACAATAATAAGCAGAAGAGCACTCAAGTTCTTTAA 702 0.4117 MECNEEMLKMIVPETQLTIVDVFGDGEKQYCFPEEIETFYVKLTDMLNSSGLTLIFNVRETSLDLFNFYLEVVKRGGYKQVGKQKQWGEVVSALKLEGNNAKLPSQIKRLYANLLYEFEKIYFYRFRATQTATHTTKALHEGLLQAPSNDKQKKKPRGVPRGANGYQIFLKHECARLKACRQDIDGKAILLTAVEGWKNLSDIDKQPYVEESKKLKEAMVIIDNNKQKSTQVL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01958 233 Pfam HMG (high mobility group) box 160 218 IPR009071 -
Vifa1g01958 233 SUPERFAMILY HMG-box 149 217 IPR036910 -
Vifa1g01958 233 ProSiteProfiles ARID domain profile. 26 123 IPR001606 GO:0003677
Vifa1g01958 233 CDD HMG-box_SF 161 217 - -
Vifa1g01958 233 CDD ARID 37 119 - -
Vifa1g01958 233 SMART ARID_2 30 119 - -
Vifa1g01958 233 SUPERFAMILY ARID-like 30 124 IPR036431 GO:0003677
Vifa1g01958 233 SMART hmgende2 158 227 IPR009071 -
Vifa1g01958 233 Gene3D - 27 140 IPR036431 GO:0003677
Vifa1g01958 233 Gene3D High mobility group box domain 145 231 IPR036910 -
Vifa1g01958 233 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 37 131 - -
Vifa1g01958 233 Pfam ARID/BRIGHT DNA binding domain 37 119 IPR001606 GO:0003677
Vifa1g01958 233 SMART bright_3 34 124 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01958 Vifa-Chr1 314868110 314869557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01958 63 152 ARID Transcription Factor Family AT1G76110 30.000 5.31e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa1g01958 ARID 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01958 - - psat:127121142 384.415