Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01956 ATGGGTAGGGTTATCAGGGTACAGCGTAAAGGTGCGGGATCAATCTTCAAATCCCACATCCACAACCGTAAAGGCCCCTCCAGATCCCGCAGTCTCGATTTCGGTGAAAGAAACGACTACCTCAAGGGAGTAATCACCGACATCATCCACGACCCAGTATTATACACTGAGAAGGTTATTTATTGCGGGAAGAAAGCTACGCTTGTTGTTAGTAATGTTTTGCCGGTTAGGTCTATTCCTGAAGGAGCTTTGATTTGTAACGTTGAACACCATGTTGGTGATCGTGGTGCTTTTGCTAGGTGCTCTGGGGATTATGTTATTGTTATTAGTCATAATCCCGATAGTGATACATCTAGGGTTAAGCCTCCATCTGGGACTTCATGGAGATTTTGTAAACACATCTGCCAATTGATCATTCAAGTTTATAAAGCTTGTGGCGATGTCGCCTGA 450 0.4422 MGRVIRVQRKGAGSIFKSHIHNRKGPSRSRSLDFGERNDYLKGVITDIIHDPVLYTEKVIYCGKKATLVVSNVLPVRSIPEGALICNVEHHVGDRGAFARCSGDYVIVISHNPDSDTSRVKPPSGTSWRFCKHICQLIIQVYKACGDVA 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01956 149 PANTHER RIBOSOMAL PROTEIN L2 2 141 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g01956 149 FunFam 60S ribosomal protein L8 62 140 - -
Vifa1g01956 149 Gene3D - 1 57 IPR012340 -
Vifa1g01956 149 SMART Ribosomal_L2_2 11 62 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g01956 149 SUPERFAMILY Nucleic acid-binding proteins 1 65 IPR012340 -
Vifa1g01956 149 SMART Ribosomal_L2_C_2 68 137 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g01956 149 Gene3D - 62 141 IPR014722 -
Vifa1g01956 149 SUPERFAMILY Translation proteins SH3-like domain 72 132 IPR008991 -
Vifa1g01956 149 FunFam 60S ribosomal protein L2 1 56 - -
Vifa1g01956 149 Pfam Ribosomal Proteins L2, C-terminal domain 71 135 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01956 Vifa-Chr1 314826600 314827133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01956 1 126 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 64.286 1.53e-66 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01956 K02938 - gmx:100798311 206.068