Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01954 ATGAGTATACTGAACATTGAGACTCCTAGGGCTTGTCGTGAATGTAGTTCATTATTAGGAGGTTTTCCATGCAATGGAGGTAGGTCGTACCAAAATTCCATATTTGATGGAAATGGTTTTTGTACAATTGAGGTGGGTAGTATCGTAAAGCCATATTTGGTGAAAAGGGTTTCCATGCAACAGAGGGTTATCAGGGTACAACGTAAAGGTGCGGGATCAATCTTCAAATCCCACACCCACAACCGTAAAGGCCCCTCCAGATCCCGCAGTCTCGATTTCGGTGAAAGAAACGACTACCGCAAGGGAGTAATCACCGACATCATCCACGACCCAGGTCATGGTGCACCTCTTTCCATGGTCACTTTCCGTCACCCATTTAGGTATAAGAAACATAACGAGCTTTTTGTTGTTGCTGAAGTATTATACACTGAGAAGGTTATTTATTGCGGGAAGAAAGCTACGCTTGTTGTTAGTAATGTTTTGCCGGTTAGGTCTATTCCTGAAGGAGCTTTGATTTGTAACGTTGAACACCATGTTGGTGATCGTGGTGCTTTTGCTAGGTGCTCTGGGGATTATGTTATTGTTATTAGTCATAATCCCGATAGTGATACATCTAGGGTTAAGCCTCCATCTGGGACTTCATGGAGATTTTGTAAACACATCTGCCAATTGATCATTCAAGTTTATAAAGCTTGTGGCGATGTCGCCTGA 711 0.429 MSILNIETPRACRECSSLLGGFPCNGGRSYQNSIFDGNGFCTIEVGSIVKPYLVKRVSMQQRVIRVQRKGAGSIFKSHTHNRKGPSRSRSLDFGERNDYRKGVITDIIHDPGHGAPLSMVTFRHPFRYKKHNELFVVAEVLYTEKVIYCGKKATLVVSNVLPVRSIPEGALICNVEHHVGDRGAFARCSGDYVIVISHNPDSDTSRVKPPSGTSWRFCKHICQLIIQVYKACGDVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01954 236 FunFam 60S ribosomal protein L8 149 226 - -
Vifa1g01954 236 Gene3D - 61 145 IPR012340 -
Vifa1g01954 236 SUPERFAMILY Translation proteins SH3-like domain 159 219 IPR008991 -
Vifa1g01954 236 Pfam Ribosomal Proteins L2, RNA binding domain 73 143 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vifa1g01954 236 SMART Ribosomal_L2_C_2 155 224 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g01954 236 SMART Ribosomal_L2_2 70 149 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g01954 236 Pfam Ribosomal Proteins L2, C-terminal domain 158 222 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g01954 236 PANTHER RIBOSOMAL PROTEIN L2 62 228 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g01954 236 SUPERFAMILY Nucleic acid-binding proteins 62 155 IPR012340 -
Vifa1g01954 236 Gene3D - 149 228 IPR014722 -
Vifa1g01954 236 FunFam 60S ribosomal protein L2 60 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01954 Vifa-Chr1 314816698 314818212 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01954 62 213 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 76.974 1.01e-85 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01954 K02938 - mnt:21409345 265.774