Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01927 ATGAAGGCATTGATTCTGGTTGGGGGGTTTGGAACTAGGTTGAGGCCATTGACACTCAGTGTCCCTAAGCCTCTTGTCGATTTTGCTAACAAACCCATGATTTTGCATCAGATAGAGGCTCTTAAGGCCGCTGGAGTCACTGAAGTGGTACTGGCCATCAATTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGATTTTGAAGCAAAACTAGGCATTAAGATTAGTTGTTCACAAGAAACCGAACCACTAGGAACTGCTGGTCCCCTGGCTCTTGCTAGGGATAAGCTGATAGATGAATCTGGAGAGCCATTTTTTGTTCTTAACAGTGATGTTATCAGTGACTATCCACTTAAAGAAATGATTGAATTCCACAAATCCCATGGAGGGGAGGCTTCCATAATGGTTACAAAGGTTGACGAGCCATCAAAATATGGTGTTGTTGTAACGGAGGAGACCACGGGACAGGTTGAGAAATTTGTTGAAAAACCCAAGTTGTTTGTTGGAAACAAAATCAATGCTGGAATTTACCTATTGAACCCATCAGTTTTGGATCGAATTGAACTGAGGCCCACTTCTATCGAAAAAGAAATTTTCCCAAAGATTGCTGCAGAGAAAAAGCTATATGCAATGGTCCTTCCTGGATTCTGGATGGACATCGGACAACCGAGGGACTATATTACTGGCTTGAGGCTTTACCTGGAGTCATTGAGGAAGAAGTCTTCTTCTAAGCTGGCCATTGGCTCTAACATTGTGGGGAATGTCATTGTTGATGAAACAGCCAAAATTGGTGAGGGATGTCTCATTGGACCTGATGTCGCTATCGGTCCTGGCTGCATTGTTGAGTCTGGTGTGAGGCTCTCACGCTGCACAGTAATGCGAGGAGTCCGGATTAAGAAGCATGCTTGCATTTCCAGCAGTATTATAGGGTGGCATTCCACCGTTGGACAATGGGCTCGAGTCGAGAATATGACTATCCTTGGGGAAGATGTTCATGTTTGTGACGAGATTTACAGCAATGGAGGTGTTGTTTTGCCCCACAAGGAGATTAAGACAAATATTCTGAAACCCGAGATTGTCATGTGA 1086 0.4392 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAAGVTEVVLAINYQPEVMLNFLKDFEAKLGIKISCSQETEPLGTAGPLALARDKLIDESGEPFFVLNSDVISDYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVTEETTGQVEKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPKIAAEKKLYAMVLPGFWMDIGQPRDYITGLRLYLESLRKKSSSKLAIGSNIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKTNILKPEIVM 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01927 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
Vifa1g01927 361 Gene3D Hexapeptide repeat proteins 235 357 - -
Vifa1g01927 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 234 IPR029044 -
Vifa1g01927 361 Pfam Nucleotidyl transferase 2 230 IPR005835 GO:0009058
Vifa1g01927 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 360 - -
Vifa1g01927 361 FunFam mannose-1-phosphate guanyltransferase beta 1 232 - -
Vifa1g01927 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Vifa1g01927 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01927 Vifa-Chr1 313240001 313241545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01927 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 22.798 1.44e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01927 K00966 - csin:114292478 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01927 1 313240001 313241545 Vifa1g01927 1 313240001 313241545 ECH
Vifa2g01597 2 427114411 427115999 Vifa1g01927 1 313240001 313241545 PCT